We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
ATP5ME
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • ATP5ME
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1039.3 nTPM
HPA Brain:241.1 nTPM
GTEx:1039.3 nTPM
FANTOM5:162.4 Scaled Tags Per Million
Pig:32.1 nTPM
Mouse:502.8 nTPM
Allen mouse:1.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

241.1
Sample id Sample description nTPM
Amygdala
nTPM: 241.1
2695 Female, age 67, right hemisphere 321.8
2814 Male, age 76, right hemisphere 258.2
2514 Male, age 75, right hemisphere 235.0
2517 Female, age 94, left hemisphere 199.7
1987 Female, age 91, left hemisphere 191.0
Basal amygdala
nTPM: 212.9
2827 Female, age 67, right hemisphere 246.4
2609 Male, age 75, right hemisphere 237.7
1955 Male, age 76, both hemispheres 231.9
2243 Female, age 91, right hemisphere 194.1
2110 Male, age 80, left hemisphere 190.6
2685 Female, age 94, left hemisphere 176.6
Central amygdala
nTPM: 218.3
2826 Female, age 94, left hemisphere 298.7
1905 Male, age 76, both hemispheres 259.1
2239 Male, age 80, left hemisphere 207.8
2701 Female, age 91, right hemisphere 169.1
2515 Male, age 75, right hemisphere 157.0
Corticomedial amygdala
nTPM: 195.3
2535 Female, age 67, right hemisphere 209.7
2829 Male, age 80, left hemisphere 209.7
2240 Male, age 76, both hemispheres 203.3
2242 Female, age 91, right hemisphere 193.7
2429 Female, age 94, left hemisphere 192.0
2428 Male, age 75, right hemisphere 163.4
Lateral amygdala
nTPM: 204.8
2830 Female, age 67, right hemisphere 241.7
2534 Female, age 94, left hemisphere 240.0
1883 Male, age 76, both hemispheres 237.2
2516 Male, age 75, right hemisphere 229.3
2256 Male, age 80, left hemisphere 149.1
2255 Female, age 91, right hemisphere 131.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1039.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1039.3
Samples: 181

Max nTPM: 3686.0
Min nTPM: 538.9
Std nTPM: 383.3
Median nTPM: 966.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3686.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2472.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2412.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2371.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 2251.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2080.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2013.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1923.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1880.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1673.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1652.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1460.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1441.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1433.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 1418.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1388.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 1360.1
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1332.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1319.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1304.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1275.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1274.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1270.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1269.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1258.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1255.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1245.0
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 1241.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 1240.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1240.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 1237.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1228.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1224.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1224.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1221.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 1207.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 1207.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1202.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1195.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1192.2
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 1182.5
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 1176.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1165.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1153.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1144.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1141.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1140.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1138.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1126.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1123.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1119.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1117.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 1110.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1104.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1102.7
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 1101.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1097.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1088.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1086.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 1086.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1080.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 1080.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 1065.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 1051.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1048.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1044.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1041.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1035.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1033.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1032.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1031.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1029.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 1024.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1017.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1017.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1012.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1012.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 1011.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1009.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 1004.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1001.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 997.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 997.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 994.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 993.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 988.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 985.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 981.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 971.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 970.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 966.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 961.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 959.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 959.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 955.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 954.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 953.3
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 951.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 946.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 944.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 942.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 941.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 941.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 936.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 935.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 933.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 930.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 927.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 918.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 898.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 895.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 895.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 893.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 888.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 886.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 882.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 880.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 879.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 876.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 875.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 872.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 868.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 860.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 853.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 851.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 848.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 847.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 845.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 843.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 840.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 836.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 835.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 833.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 833.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 828.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 827.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 827.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 817.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 815.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 813.8
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 807.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 802.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 802.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 790.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 781.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 779.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 776.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 771.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 770.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 766.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 765.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 763.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 761.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 760.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 756.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 755.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 750.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 748.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 745.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 733.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 730.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 718.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 717.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 706.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 702.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 691.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 683.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 681.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 676.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 674.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 673.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 654.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 653.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 608.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 602.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 593.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 574.5
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 574.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 564.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 539.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 538.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

162.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 162.4
FF:10151-102I7 76 years, female 162.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32.1
Pig sample Sample description nTPM
Amygdala
nTPM: 32.1
Samples: 4

Max nTPM: 44.3
Min nTPM: 22.7
Sample A Female 44.3
Sample B Female 31.9
Sample C Male 29.4
Sample D Male 22.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

502.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 502.8
Samples: 4

Max nTPM: 586.3
Min nTPM: 446.2
Sample A Male 446.2
Sample B Male 518.1
Sample C Female 586.3
Sample D Female 460.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.2
74426449 Antisense, RP_051121_02_B10, Mouse strain C57BL/6J (56 days, male) 1.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo