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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1035.3 nTPM
HPA Brain:268.5 nTPM
GTEx:1035.3 nTPM
FANTOM5:232.3 Scaled Tags Per Million
Pig:38.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

268.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 268.5
2565 Male, age 75, midline 314.1
1981 Female, age 72, midline 304.3
2048 Male, age 55, midline 259.6
2194 Female, age 79, both hemispheres 257.6
2816 Male, age 47, midline 207.2
Cervical spinal cord, dorsal horn
nTPM: 242.4
2173 Female, age 72, unknown 335.0
2296 Male, age 66, both hemispheres 286.5
2069 Male, age 47, both hemispheres 249.7
1877 Male, age 55, unknown 218.4
2721 Male, age 90, both hemispheres 188.2
2297 Male, age 75, both hemispheres 176.7
Cervical spinal cord, ventral horn
nTPM: 251.0
2809 Male, age 90, both hemispheres 284.5
2098 Female, age 72, unknown 270.4
2068 Male, age 55, unknown 255.8
2480 Male, age 75, both hemispheres 241.8
2820 Female, age 79, both hemispheres 237.5
2295 Male, age 66, both hemispheres 215.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1035.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1035.3
Samples: 204

Max nTPM: 2241.9
Min nTPM: 391.2
Std nTPM: 335.5
Median nTPM: 980.9
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 2241.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 2207.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 2137.9
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 1979.3
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 1935.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1881.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1810.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 1807.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 1777.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 1765.5
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 1705.2
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 1692.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 1665.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1646.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1640.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1595.0
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 1587.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1555.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1508.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1505.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 1477.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1476.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1463.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1454.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 1441.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1421.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1404.7
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 1392.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1380.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1366.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1347.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 1343.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1332.2
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 1313.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1309.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1299.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 1290.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1259.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 1242.8
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 1241.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1239.6
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 1238.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1236.4
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 1216.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1211.6
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 1203.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1201.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1196.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1192.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1177.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 1177.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1177.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1176.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1169.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1167.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1163.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1155.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1149.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1142.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1132.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1131.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1129.4
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 1122.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1108.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1105.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 1104.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1095.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1090.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1077.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 1074.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1071.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1071.1
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 1064.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1062.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1061.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1056.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1055.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1053.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1043.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1042.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1038.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1036.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1036.9
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 1033.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1032.8
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 1029.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1028.7
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 1024.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1022.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1021.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 1021.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1011.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1011.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1010.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1007.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1005.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1003.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1001.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 997.4
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 990.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 989.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 981.6
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 980.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 979.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 978.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 974.1
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 972.6
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 972.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 969.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 961.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 960.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 958.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 953.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 948.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 946.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 945.8
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 943.7
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 943.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 940.9
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 937.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 933.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 932.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 926.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 922.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 919.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 913.2
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 900.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 898.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 897.7
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 897.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 895.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 894.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 893.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 890.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 888.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 881.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 880.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 873.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 866.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 863.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 863.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 862.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 861.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 860.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 858.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 853.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 839.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 826.6
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 825.8
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 824.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 824.3
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 813.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 813.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 805.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 804.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 784.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 783.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 776.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 775.6
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 774.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 767.7
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 763.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 762.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 759.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 756.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 754.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 754.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 753.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 747.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 742.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 740.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 736.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 727.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 722.7
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 722.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 717.4
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 712.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 696.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 696.2
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 693.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 684.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 677.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 667.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 666.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 664.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 655.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 645.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 642.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 638.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 635.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 622.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 620.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 605.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 592.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 577.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 573.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 566.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 561.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 555.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 536.0
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 528.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 509.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 408.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 391.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

232.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 232.3
FF:10181-103D1 60 years, female 350.0
FF:10159-103A6 76 years, female 114.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

38.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 31.2
Samples: 4

Max nTPM: 33.2
Min nTPM: 29.5
Sample A Female 30.7
Sample B Female 31.4
Sample C Male 33.2
Sample D Male 29.5
Ventral spinal cord
nTPM: 38.2
Samples: 4

Max nTPM: 45.2
Min nTPM: 32.8
Sample A Female 33.0
Sample B Female 41.6
Sample C Male 45.2
Sample D Male 32.8

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