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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:46.7 nTPM
HPA Brain:45.0 nTPM
GTEx:46.7 nTPM
FANTOM5:75.6 Scaled Tags Per Million
Pig:39.4 nTPM
Mouse:36.8 nTPM
Allen mouse:0.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

45.0
Sample id Sample description nTPM
Amygdala
nTPM: 45.0
2514 Male, age 75, right hemisphere 58.4
1987 Female, age 91, left hemisphere 53.1
2517 Female, age 94, left hemisphere 43.3
2814 Male, age 76, right hemisphere 41.9
2695 Female, age 67, right hemisphere 28.7
Basal amygdala
nTPM: 37.4
2609 Male, age 75, right hemisphere 56.5
2243 Female, age 91, right hemisphere 42.5
2110 Male, age 80, left hemisphere 41.6
1955 Male, age 76, both hemispheres 39.2
2685 Female, age 94, left hemisphere 31.4
2827 Female, age 67, right hemisphere 13.0
Central amygdala
nTPM: 37.5
2701 Female, age 91, right hemisphere 42.9
1905 Male, age 76, both hemispheres 40.7
2515 Male, age 75, right hemisphere 40.4
2239 Male, age 80, left hemisphere 37.0
2826 Female, age 94, left hemisphere 26.5
Corticomedial amygdala
nTPM: 43.8
2428 Male, age 75, right hemisphere 55.1
2829 Male, age 80, left hemisphere 53.9
2242 Female, age 91, right hemisphere 53.6
2240 Male, age 76, both hemispheres 46.7
2429 Female, age 94, left hemisphere 36.2
2535 Female, age 67, right hemisphere 17.4
Lateral amygdala
nTPM: 31.2
2516 Male, age 75, right hemisphere 44.5
2256 Male, age 80, left hemisphere 38.1
2255 Female, age 91, right hemisphere 34.5
1883 Male, age 76, both hemispheres 33.0
2534 Female, age 94, left hemisphere 26.6
2830 Female, age 67, right hemisphere 10.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 46.7
Samples: 181

Max nTPM: 135.0
Min nTPM: 6.0
Std nTPM: 22.6
Median nTPM: 44.1
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 135.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 106.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 105.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 100.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 98.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 97.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 96.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 95.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 90.1
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 88.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 88.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 84.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 82.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 82.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 81.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 80.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 80.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 79.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 74.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 71.1
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 70.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 70.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 70.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 70.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 70.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 69.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 69.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 69.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 68.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 68.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 68.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 67.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 67.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 65.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 65.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 64.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 64.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 63.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 63.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 63.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 63.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 62.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 62.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 62.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 61.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 60.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 60.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 60.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 59.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 59.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 58.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 58.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 58.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 57.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 55.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 55.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 55.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 55.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 55.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 54.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 54.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 54.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 53.9
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 53.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 53.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 53.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 52.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 51.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 51.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 50.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 50.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 50.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 49.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 49.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 49.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 48.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 48.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 48.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 47.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 46.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 46.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 46.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 46.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 46.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 45.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 45.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 44.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 44.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 44.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 44.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 44.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 43.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 43.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 42.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 42.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 41.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 41.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 41.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 41.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 41.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 40.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 40.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 40.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 40.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 40.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 40.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 39.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 39.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 38.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 37.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 37.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 37.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 37.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 37.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 36.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 36.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 36.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 35.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 35.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 35.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 35.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 35.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 34.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 34.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 34.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 33.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 32.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 32.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 32.5
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 32.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 31.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 31.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 31.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 31.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 31.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 30.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 30.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 30.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 29.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 29.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 29.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 29.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 29.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 29.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 29.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 28.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 27.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 26.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 25.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 24.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 23.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 23.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 23.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 22.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 22.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 22.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 22.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 22.0
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 21.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 21.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 20.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 20.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 20.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 19.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 18.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 16.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 16.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 15.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 15.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 15.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 14.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 14.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 14.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 13.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 13.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 12.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 12.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 10.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 9.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 8.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 6.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

75.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 75.6
FF:10151-102I7 76 years, female 75.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

39.4
Pig sample Sample description nTPM
Amygdala
nTPM: 39.4
Samples: 4

Max nTPM: 55.9
Min nTPM: 28.1
Sample A Female 55.9
Sample B Female 28.1
Sample C Male 32.7
Sample D Male 40.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

36.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 36.8
Samples: 4

Max nTPM: 39.7
Min nTPM: 33.1
Sample A Male 39.7
Sample B Male 35.2
Sample C Female 33.1
Sample D Female 39.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.6
72080155 Antisense, RP_051017_03_C11, Mouse strain C57BL/6J (56 days, male) 0.9
69012849 Antisense, RP_050309_01_F03, Mouse strain C57BL/6J (56 days, male) 0.4

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