BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.9 nTPM
HPA Brain:391.3 nTPM
GTEx:18.9 nTPM
FANTOM5:84.0 Scaled Tags Per Million
Mouse:110.0 nTPM
Rat:114.6 nTPM
Pig:132.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 391.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 250.9
2586 Male, age 75, left hemisphere 369.5
2828 Female, age 72, unknown 341.6
1827 Male, age 72, unknown 284.0
2411 Female, age 72, unknown 275.8
2666 Male, age 74, left hemisphere 218.6
1830 Male, age 51, unknown 212.2
1833 Male, age 53, unknown 205.5
2219 Male, age 76, both hemispheres 204.2
1870 Female, age 42, unknown 200.7
2019 Male, age 18, unknown 196.8
Dorsal raphe nucleus
nTPM: 245.9
2750 Male, age 76, both hemispheres 337.0
2298 Female, age 72, unknown 271.7
2047 Male, age 72, unknown 234.5
1828 Male, age 53, unknown 197.3
2016 Female, age 72, unknown 188.9
Inferior colliculus
nTPM: 185.3
1848 Female, age 42, unknown 197.3
2849 Male, age 72, unknown 190.3
1890 Male, age 53, unknown 180.1
2097 Female, age 72, unknown 173.3
Median raphe nucleus
nTPM: 245.2
2220 Male, age 76, midline 245.2
Periaquaductal grey, anterior
nTPM: 391.3
2502 Female, age 75, unknown 430.0
1795 Male, age 51, unknown 386.3
1947 Male, age 18, unknown 357.6
Periaquaductal grey, dorsal
nTPM: 241.7
2464 Female, age 72, unknown 279.6
1831 Male, age 72, unknown 233.6
1840 Male, age 53, unknown 228.3
2850 Male, age 76, both hemispheres 225.1
Periaquaductal grey, lateral
nTPM: 260.9
2053 Male, age 18, unknown 276.4
2272 Male, age 74, both hemispheres 253.5
2140 Male, age 76, both hemispheres 252.7
Pretectal area
nTPM: 278.3
2667 Female, age 75, unknown 507.4
2316 Male, age 76, right hemisphere 292.1
2007 Male, age 72, unknown 290.9
2825 Male, age 18, unknown 287.7
2224 Female, age 72, unknown 271.5
1816 Male, age 51, unknown 268.4
2407 Male, age 75, both hemispheres 264.7
1815 Male, age 53, unknown 250.5
2273 Male, age 74, both hemispheres 225.3
1944 Female, age 72, unknown 206.6
1817 Female, age 42, unknown 195.8
Red nucleus
nTPM: 202.3
2588 Male, age 74, left hemisphere 245.3
2584 Male, age 75, left hemisphere 244.2
2769 Male, age 72, unknown 239.8
2785 Male, age 18, unknown 228.7
2823 Male, age 76, right hemisphere 218.7
2725 Female, age 75, unknown 202.9
2227 Male, age 72, unknown 202.2
2503 Female, age 72, unknown 197.0
1865 Male, age 51, unknown 194.5
1904 Male, age 53, unknown 161.2
1821 Female, age 72, unknown 149.7
1954 Female, age 42, unknown 143.4
Substantia nigra
nTPM: 170.5
1941 Male, age 53, unknown 254.5
1916 Female, age 42, unknown 243.0
2665 Male, age 74, both hemispheres 181.5
1851 Male, age 51, unknown 180.7
1889 Female, age 72, unknown 176.7
2583 Male, age 75, right hemisphere 173.7
2699 Male, age 18, unknown 146.6
2409 Female, age 72, unknown 121.3
2241 Male, age 72, unknown 119.6
2590 Female, age 75, unknown 107.8
Superior colliculus
nTPM: 243.2
2664 Male, age 75, both hemispheres 337.4
1796 Male, age 53, unknown 293.7
2261 Male, age 18, unknown 279.3
2587 Male, age 74, left hemisphere 241.6
2087 Female, age 72, unknown 241.3
1839 Male, age 51, unknown 228.9
1995 Male, age 72, unknown 219.9
1913 Female, age 42, unknown 212.7
1895 Male, age 76, right hemisphere 205.4
2668 Female, age 75, unknown 172.1
Ventral tegmental area
nTPM: 212.8
2223 Female, age 72, unknown 247.4
1942 Male, age 51, unknown 239.9
2021 Male, age 53, unknown 231.4
2218 Male, age 76, both hemispheres 195.1
1915 Female, age 42, unknown 182.4
2410 Female, age 72, unknown 180.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 18.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.9
Samples: 183

Max nTPM: 51.0
Min nTPM: 5.2
Std nTPM: 8.0
Median nTPM: 17.4
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 51.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 43.6
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 41.8
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 41.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 39.5
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 38.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 37.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 35.4
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 34.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 33.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 33.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 84.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.0
FF:10158-103A5 76 years, female 84.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 132.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 132.2
Samples: 3

Max nTPM: 153.0
Min nTPM: 94.1
Sample A Female 153.0
Sample B Female 94.1
Sample C Male 149.6
Midbrain
nTPM: 104.0
Samples: 3

Max nTPM: 135.5
Min nTPM: 82.3
Sample B Female 94.1
Sample C Male 135.5
Sample D Male 82.3
Periaqueductal gray
nTPM: 98.0
Samples: 3

Max nTPM: 118.1
Min nTPM: 80.6
Sample B Female 95.4
Sample C Male 118.1
Sample D Male 80.6
Superior colliculi
nTPM: 98.5
Samples: 4

Max nTPM: 111.1
Min nTPM: 74.4
Sample A Female 101.3
Sample B Female 74.4
Sample C Male 111.1
Sample D Male 107.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 110.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 110.0
Samples: 4

Max nTPM: 122.9
Min nTPM: 97.4
Sample A 97.4
Sample B 122.9
Sample C 109.8
Sample D 110.0

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 114.6
Rat sample Sample description nTPM
Midbrain
nTPM: 114.6
Samples: 4

Max nTPM: 124.5
Min nTPM: 105.2
Sample A 105.2
Sample A 124.5
Sample A 117.0
Sample A 111.6

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