MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:207.8 nTPM
HPA Brain:132.9 nTPM
GTEx:207.8 nTPM
FANTOM5:243.7 Scaled Tags Per Million
Pig:65.7 nTPM
Mouse:259.1 nTPM
Allen mouse:13.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 132.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 116.9
1870 Female, age 42, unknown 136.4
2019 Male, age 18, unknown 134.9
2411 Female, age 72, unknown 131.7
1827 Male, age 72, unknown 125.6
2828 Female, age 72, unknown 120.8
1833 Male, age 53, unknown 115.4
1830 Male, age 51, unknown 113.5
2586 Male, age 75, left hemisphere 105.1
2219 Male, age 76, both hemispheres 93.0
2666 Male, age 74, left hemisphere 92.2
Dorsal raphe nucleus
nTPM: 132.9
2298 Female, age 72, unknown 157.5
1828 Male, age 53, unknown 131.8
2016 Female, age 72, unknown 130.6
2750 Male, age 76, both hemispheres 124.7
2047 Male, age 72, unknown 119.8
Inferior colliculus
nTPM: 129.0
2097 Female, age 72, unknown 159.2
1890 Male, age 53, unknown 126.6
1848 Female, age 42, unknown 122.6
2849 Male, age 72, unknown 107.4
Median raphe nucleus
nTPM: 110.3
2220 Male, age 76, midline 110.3
Periaquaductal grey, anterior
nTPM: 129.5
2502 Female, age 75, unknown 137.1
1947 Male, age 18, unknown 133.8
1795 Male, age 51, unknown 117.5
Periaquaductal grey, dorsal
nTPM: 122.3
2850 Male, age 76, both hemispheres 131.7
1840 Male, age 53, unknown 128.3
2464 Female, age 72, unknown 115.3
1831 Male, age 72, unknown 113.9
Periaquaductal grey, lateral
nTPM: 123.7
2140 Male, age 76, both hemispheres 126.2
2053 Male, age 18, unknown 126.1
2272 Male, age 74, both hemispheres 118.8
Pretectal area
nTPM: 129.9
2273 Male, age 74, both hemispheres 148.4
2667 Female, age 75, unknown 141.3
1817 Female, age 42, unknown 138.7
1816 Male, age 51, unknown 137.9
2224 Female, age 72, unknown 135.3
2007 Male, age 72, unknown 130.8
1944 Female, age 72, unknown 129.6
2316 Male, age 76, right hemisphere 128.7
1815 Male, age 53, unknown 125.3
2825 Male, age 18, unknown 108.3
2407 Male, age 75, both hemispheres 104.3
Red nucleus
nTPM: 131.2
1821 Female, age 72, unknown 169.4
1954 Female, age 42, unknown 142.0
1865 Male, age 51, unknown 139.4
2503 Female, age 72, unknown 138.2
1904 Male, age 53, unknown 137.5
2823 Male, age 76, right hemisphere 133.7
2725 Female, age 75, unknown 131.8
2227 Male, age 72, unknown 130.7
2769 Male, age 72, unknown 129.3
2785 Male, age 18, unknown 124.5
2588 Male, age 74, left hemisphere 104.6
2584 Male, age 75, left hemisphere 93.0
Substantia nigra
nTPM: 127.5
2241 Male, age 72, unknown 148.8
1916 Female, age 42, unknown 140.6
1851 Male, age 51, unknown 137.9
2409 Female, age 72, unknown 136.3
1889 Female, age 72, unknown 134.5
1941 Male, age 53, unknown 123.4
2699 Male, age 18, unknown 119.1
2590 Female, age 75, unknown 118.3
2665 Male, age 74, both hemispheres 111.5
2583 Male, age 75, right hemisphere 103.9
Superior colliculus
nTPM: 122.2
1913 Female, age 42, unknown 133.5
1995 Male, age 72, unknown 132.4
2587 Male, age 74, left hemisphere 132.2
2261 Male, age 18, unknown 131.0
1796 Male, age 53, unknown 123.8
1895 Male, age 76, right hemisphere 123.7
2087 Female, age 72, unknown 123.6
1839 Male, age 51, unknown 113.3
2668 Female, age 75, unknown 110.6
2664 Male, age 75, both hemispheres 98.3
Ventral tegmental area
nTPM: 124.6
2410 Female, age 72, unknown 146.4
1915 Female, age 42, unknown 130.2
1942 Male, age 51, unknown 119.9
2223 Female, age 72, unknown 118.2
2021 Male, age 53, unknown 118.0
2218 Male, age 76, both hemispheres 114.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 207.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 207.8
Samples: 183

Max nTPM: 330.2
Min nTPM: 136.1
Std nTPM: 40.3
Median nTPM: 197.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 330.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 322.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 322.2
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 302.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 301.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 297.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 296.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 291.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 290.1
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 288.9
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 287.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 243.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 243.7
FF:10158-103A5 76 years, female 243.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 65.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 63.4
Samples: 4

Max nTPM: 65.7
Min nTPM: 59.6
Sample A Female 65.5
Sample B Female 65.7
Sample C Male 59.6
Sample D Male 62.8
Midbrain
nTPM: 65.7
Samples: 4

Max nTPM: 74.5
Min nTPM: 59.4
Sample A Female 74.5
Sample B Female 66.3
Sample C Male 59.4
Sample D Male 62.6
Periaqueductal gray
nTPM: 62.4
Samples: 3

Max nTPM: 62.7
Min nTPM: 62.0
Sample B Female 62.0
Sample C Male 62.5
Sample D Male 62.7
Superior colliculi
nTPM: 65.5
Samples: 4

Max nTPM: 67.9
Min nTPM: 62.7
Sample A Female 67.2
Sample B Female 67.9
Sample C Male 64.3
Sample D Male 62.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 259.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 259.1
Samples: 4

Max nTPM: 265.8
Min nTPM: 255.6
Sample A Male 265.8
Sample B Male 255.6
Sample C Female 257.9
Sample D Female 257.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 13.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.1
70593287 Antisense, RP_050407_01_G07, Mouse strain C57BL/6J (56 days, male) 13.1

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