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  • TISSUE

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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:214.5 nTPM
HPA Brain:175.8 nTPM
GTEx:214.5 nTPM
FANTOM5:187.7 Scaled Tags Per Million
Pig:78.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

175.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 161.0
1981 Female, age 72, midline 206.1
2048 Male, age 55, midline 174.2
2565 Male, age 75, midline 166.1
2816 Male, age 47, midline 132.5
2194 Female, age 79, both hemispheres 126.2
Cervical spinal cord, dorsal horn
nTPM: 175.8
2173 Female, age 72, unknown 231.1
2069 Male, age 47, both hemispheres 204.6
2296 Male, age 66, both hemispheres 198.4
1877 Male, age 55, unknown 155.8
2297 Male, age 75, both hemispheres 135.0
2721 Male, age 90, both hemispheres 130.2
Cervical spinal cord, ventral horn
nTPM: 160.1
2098 Female, age 72, unknown 235.9
2809 Male, age 90, both hemispheres 171.4
2480 Male, age 75, both hemispheres 158.4
2068 Male, age 55, unknown 145.7
2295 Male, age 66, both hemispheres 142.9
2820 Female, age 79, both hemispheres 106.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

214.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 214.5
Samples: 204

Max nTPM: 341.3
Min nTPM: 155.5
Std nTPM: 37.0
Median nTPM: 207.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 341.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 332.3
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 329.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 322.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 315.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 308.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 307.2
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 302.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 296.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 293.3
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 289.7
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 288.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 285.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 283.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 280.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 278.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 273.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 271.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 268.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 267.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 267.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 265.0
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 264.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 261.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 257.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 256.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 255.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 254.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 251.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 250.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 249.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 248.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 246.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 245.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 245.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 243.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 243.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 243.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 243.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 243.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 241.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 239.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 237.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 237.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 237.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 235.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 235.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 235.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 233.4
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 233.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 233.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 232.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 231.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 230.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 229.5
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 229.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 227.2
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 227.1
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 226.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 226.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 225.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 224.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 223.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 223.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 222.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 222.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 221.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 220.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 220.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 219.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 218.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 218.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 217.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 217.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 217.3
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 217.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 217.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 216.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 216.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 216.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 216.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 215.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 215.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 215.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 215.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 215.3
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 213.8
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 213.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 212.7
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 212.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 211.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 211.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 210.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 210.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 210.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 210.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 209.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 209.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 209.2
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 208.1
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 208.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 207.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 207.5
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 207.5
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 207.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 206.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 206.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 206.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 206.4
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 205.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 205.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 205.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 204.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 203.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 203.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 203.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 203.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 203.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 202.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 202.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 202.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 202.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 201.9
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 201.9
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 200.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 200.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 200.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 199.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 198.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 197.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 197.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 197.4
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 197.0
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 196.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 196.7
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 194.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 193.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 193.4
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 193.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 193.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 192.6
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 192.5
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 191.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 191.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 191.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 191.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 190.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 190.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 189.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 189.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 189.8
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 189.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 189.2
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 188.8
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 188.6
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 188.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 188.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 187.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 187.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 186.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 186.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 186.1
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 185.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 185.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 184.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 184.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 184.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 184.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 183.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 183.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 182.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 179.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 178.4
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 177.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 177.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 177.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 175.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 175.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 175.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 175.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 173.8
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 173.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 172.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 172.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 172.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 170.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 169.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 168.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 168.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 168.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 167.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 166.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 166.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 166.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 165.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 165.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 165.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 164.1
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 163.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 161.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 160.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 158.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 158.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 155.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

187.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 187.7
FF:10159-103A6 76 years, female 219.4
FF:10181-103D1 60 years, female 156.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

78.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 68.2
Samples: 4

Max nTPM: 74.5
Min nTPM: 62.6
Sample A Female 63.7
Sample B Female 74.5
Sample C Male 72.1
Sample D Male 62.6
Ventral spinal cord
nTPM: 78.2
Samples: 4

Max nTPM: 87.3
Min nTPM: 74.1
Sample A Female 76.4
Sample B Female 87.3
Sample C Male 74.1
Sample D Male 75.0

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