HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:99.7 nTPM
HPA Brain:61.3 nTPM
GTEx:99.7 nTPM
FANTOM5:89.5 Scaled Tags Per Million
Pig:31.8 nTPM
Mouse:14.0 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA023371Antibody HPA023863
Glial cells Not detectedNot detected
Neuronal cells HighNot detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 61.3
Sample id Sample description nTPM
Hippocampus
nTPM: 57.9
1898 Male, age 80, left hemisphere 77.7
2621 Female, age 67, right hemisphere 62.4
2529 Female, age 94, left hemisphere 59.7
2148 Female, age 91, left hemisphere 50.5
1911 Female, age 85, right hemisphere 49.2
1855 Male, age 76, left hemisphere 47.9
Dentate gyrus
nTPM: 54.6
2528 Male, age 74, both hemispheres 67.8
2530 Female, age 94, left hemisphere 63.8
2246 Female, age 85, both hemispheres 56.7
2010 Male, age 76, both hemispheres 50.6
1927 Female, age 91, both hemispheres 50.4
2531 Female, age 67, both hemispheres 38.0
Entorhinal gyrus
nTPM: 50.4
2117 Female, age 91, right hemisphere 63.8
1938 Female, age 85, left hemisphere 62.1
2764 Male, age 80, right hemisphere 51.2
1787 Male, age 76, left hemisphere 46.2
2686 Male, age 75, right hemisphere 41.0
2613 Female, age 94, left hemisphere 38.0
Hippocampus, CA1
nTPM: 61.3
2749 Male, age 80, left hemisphere 81.7
2527 Male, age 74, both hemispheres 76.7
1873 Female, age 85, both hemispheres 58.8
2082 Female, age 91, right hemisphere 50.4
2045 Male, age 76, both hemispheres 39.0
Hippocampus, CA2
nTPM: 57.9
2249 Male, age 74, both hemispheres 84.9
1963 Male, age 80, left hemisphere 71.4
1940 Female, age 85, left hemisphere 51.7
2113 Female, age 91, right hemisphere 48.5
2437 Female, age 94, left hemisphere 47.1
1892 Male, age 76, both hemispheres 43.7
Hippocampus, CA3
nTPM: 52.5
2436 Male, age 74, both hemispheres 81.6
2137 Male, age 80, left hemisphere 51.2
2861 Female, age 67, both hemispheres 49.0
1891 Female, age 85, both hemispheres 48.0
2620 Female, age 94, left hemisphere 43.7
1867 Male, age 76, both hemispheres 41.8
Parahippocampal cortex
nTPM: 55.2
2692 Male, age 74, both hemispheres 74.7
2250 Female, age 67, right hemisphere 69.5
2622 Female, age 67, right hemisphere 61.7
2245 Female, age 91, both hemispheres 58.5
2532 Female, age 72, left hemisphere 53.9
1990 Female, age 91, right hemisphere 52.8
1933 Female, age 85, both hemispheres 52.2
2018 Male, age 76, both hemispheres 48.4
1850 Male, age 80, both hemispheres 40.9
2693 Female, age 94, both hemispheres 39.2
Perirhinal gyrus
nTPM: 46.0
1794 Male, age 80, right hemisphere 57.8
1847 Female, age 91, left hemisphere 56.5
1841 Female, age 85, right hemisphere 44.2
2521 Female, age 94, right hemisphere 42.0
2848 Male, age 76, right hemisphere 29.2
Subiculum
nTPM: 52.3
2619 Male, age 74, both hemispheres 79.6
2729 Female, age 91, right hemisphere 58.2
1977 Female, age 85, both hemispheres 57.3
1901 Male, age 80, both hemispheres 48.3
2042 Male, age 76, both hemispheres 45.9
2438 Female, age 94, left hemisphere 24.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 99.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 99.7
Samples: 255

Max nTPM: 281.4
Min nTPM: 44.8
Std nTPM: 32.4
Median nTPM: 94.2
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 281.4
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 234.0
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 211.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 197.2
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 191.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 173.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 171.9
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 167.9
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 165.0
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 164.5
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 163.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 89.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 89.5
FF:10153-102I9 76 years, female 106.4
FF:10169-103B7 60 years, female 72.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 31.8
Pig sample Sample description nTPM
Subiculum
nTPM: 30.5
Samples: 4

Max nTPM: 37.5
Min nTPM: 25.3
Sample A Female 37.5
Sample B Female 30.2
Sample C Male 28.9
Sample D Male 25.3
Dorsal hippocampus
nTPM: 28.1
Samples: 4

Max nTPM: 36.4
Min nTPM: 18.1
Sample A Female 36.4
Sample B Female 26.8
Sample C Male 31.2
Sample D Male 18.1
Entorhinal cortex
nTPM: 29.0
Samples: 4

Max nTPM: 37.3
Min nTPM: 19.5
Sample A Female 25.3
Sample B Female 33.9
Sample C Male 37.3
Sample D Male 19.5
Ventral hippocampus
nTPM: 31.8
Samples: 4

Max nTPM: 43.2
Min nTPM: 24.6
Sample A Female 31.0
Sample B Female 28.5
Sample C Male 43.2
Sample D Male 24.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 14.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 10.9
Samples: 4

Max nTPM: 11.4
Min nTPM: 9.8
Sample A Male 11.2
Sample B Male 9.8
Sample C Female 11.4
Sample D Female 11.1
Hippocampal formation
nTPM: 14.0
Samples: 4

Max nTPM: 17.1
Min nTPM: 10.7
Sample A Male 10.7
Sample B Male 12.8
Sample C Female 15.5
Sample D Female 17.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.1
68301993 Antisense, RP_041130_02_B12, Mouse strain C57BL/6J (56 days, male) 0.1

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