BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:801.8 nTPM
HPA Brain:412.4 nTPM
GTEx:801.8 nTPM
FANTOM5:326.5 Scaled Tags Per Million
Macaque:0.2 nTPM
Mouse:178.4 nTPM
Rat:80.6 nTPM
Pig:824.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 412.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 365.7
2828 Female, age 72, unknown 412.1
2411 Female, age 72, unknown 391.4
1870 Female, age 42, unknown 390.6
1827 Male, age 72, unknown 385.3
1833 Male, age 53, unknown 376.2
1830 Male, age 51, unknown 365.6
2666 Male, age 74, left hemisphere 365.6
2019 Male, age 18, unknown 355.8
2586 Male, age 75, left hemisphere 335.1
2219 Male, age 76, both hemispheres 279.5
Dorsal raphe nucleus
nTPM: 400.7
2298 Female, age 72, unknown 465.0
2750 Male, age 76, both hemispheres 399.1
1828 Male, age 53, unknown 390.4
2016 Female, age 72, unknown 382.0
2047 Male, age 72, unknown 366.9
Inferior colliculus
nTPM: 350.4
2097 Female, age 72, unknown 399.2
1890 Male, age 53, unknown 340.8
2849 Male, age 72, unknown 335.3
1848 Female, age 42, unknown 326.3
Median raphe nucleus
nTPM: 412.4
2220 Male, age 76, midline 412.4
Periaquaductal grey, anterior
nTPM: 353.7
1947 Male, age 18, unknown 370.6
1795 Male, age 51, unknown 350.1
2502 Female, age 75, unknown 340.4
Periaquaductal grey, dorsal
nTPM: 349.7
2850 Male, age 76, both hemispheres 381.6
1840 Male, age 53, unknown 361.1
1831 Male, age 72, unknown 345.0
2464 Female, age 72, unknown 311.1
Periaquaductal grey, lateral
nTPM: 354.3
2053 Male, age 18, unknown 358.8
2140 Male, age 76, both hemispheres 356.4
2272 Male, age 74, both hemispheres 347.6
Pretectal area
nTPM: 377.3
1817 Female, age 42, unknown 415.7
2667 Female, age 75, unknown 405.5
1815 Male, age 53, unknown 397.3
2273 Male, age 74, both hemispheres 390.6
1816 Male, age 51, unknown 387.5
2224 Female, age 72, unknown 386.3
2007 Male, age 72, unknown 374.4
2825 Male, age 18, unknown 368.1
1944 Female, age 72, unknown 363.7
2316 Male, age 76, right hemisphere 344.2
2407 Male, age 75, both hemispheres 317.5
Red nucleus
nTPM: 373.7
1821 Female, age 72, unknown 472.6
2503 Female, age 72, unknown 403.8
2823 Male, age 76, right hemisphere 401.2
1904 Male, age 53, unknown 395.4
1865 Male, age 51, unknown 382.7
2227 Male, age 72, unknown 377.5
1954 Female, age 42, unknown 373.7
2769 Male, age 72, unknown 371.8
2725 Female, age 75, unknown 359.0
2785 Male, age 18, unknown 357.7
2588 Male, age 74, left hemisphere 311.3
2584 Male, age 75, left hemisphere 277.7
Substantia nigra
nTPM: 396.3
1916 Female, age 42, unknown 483.5
1851 Male, age 51, unknown 427.8
2699 Male, age 18, unknown 424.5
2241 Male, age 72, unknown 412.8
1889 Female, age 72, unknown 402.6
2665 Male, age 74, both hemispheres 401.7
1941 Male, age 53, unknown 367.2
2409 Female, age 72, unknown 365.7
2590 Female, age 75, unknown 351.8
2583 Male, age 75, right hemisphere 325.6
Superior colliculus
nTPM: 369.4
2587 Male, age 74, left hemisphere 411.4
2668 Female, age 75, unknown 410.7
1913 Female, age 42, unknown 397.8
1995 Male, age 72, unknown 374.7
1796 Male, age 53, unknown 368.2
2087 Female, age 72, unknown 360.8
2261 Male, age 18, unknown 349.0
2664 Male, age 75, both hemispheres 348.8
1839 Male, age 51, unknown 340.4
1895 Male, age 76, right hemisphere 332.2
Ventral tegmental area
nTPM: 399.3
1915 Female, age 42, unknown 445.4
2410 Female, age 72, unknown 432.0
2218 Male, age 76, both hemispheres 394.6
2223 Female, age 72, unknown 376.6
1942 Male, age 51, unknown 375.2
2021 Male, age 53, unknown 371.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 801.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 801.8
Samples: 183

Max nTPM: 1355.9
Min nTPM: 453.6
Std nTPM: 167.1
Median nTPM: 793.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1355.9
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 1324.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1321.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1279.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1207.6
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 1202.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1189.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1133.6
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 1126.7
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 1121.9
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 1111.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 326.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 326.5
FF:10158-103A5 76 years, female 326.5

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 0.2
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 303.6
Samples: 1

Max nTPM: 303.6
Min nTPM: 303.6
Sample A 303.6
Midbrain
nTPM: 258.7
Samples: 1

Max nTPM: 258.7
Min nTPM: 258.7
Sample A 258.7
Superior colliculi
nTPM: 233.9
Samples: 1

Max nTPM: 233.9
Min nTPM: 233.9
Sample A 233.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 824.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 824.2
Samples: 3

Max nTPM: 1054.3
Min nTPM: 693.8
Sample A Female 1054.3
Sample B Female 724.6
Sample C Male 693.8
Midbrain
nTPM: 666.5
Samples: 3

Max nTPM: 813.8
Min nTPM: 577.3
Sample B Female 813.8
Sample C Male 608.3
Sample D Male 577.3
Periaqueductal gray
nTPM: 648.7
Samples: 3

Max nTPM: 680.4
Min nTPM: 622.2
Sample B Female 622.2
Sample C Male 680.4
Sample D Male 643.5
Superior colliculi
nTPM: 769.9
Samples: 4

Max nTPM: 1000.4
Min nTPM: 634.9
Sample A Female 1000.4
Sample B Female 634.9
Sample C Male 721.8
Sample D Male 722.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 178.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 178.5
Samples: 4

Max nTPM: 181.9
Min nTPM: 176.2
Sample A 181.9
Sample B 177.9
Sample C 176.2
Sample D 177.9

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 80.6
Rat sample Sample description nTPM
Midbrain
nTPM: 80.6
Samples: 4

Max nTPM: 83.8
Min nTPM: 77.6
Sample A 77.6
Sample A 82.9
Sample A 83.8
Sample A 77.9

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