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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1813.5 nTPM
HPA Brain:1165.5 nTPM
GTEx:1813.5 nTPM
FANTOM5:457.3 Scaled Tags Per Million
Pig:2427.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1165.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 959.7
1981 Female, age 72, midline 1393.9
2194 Female, age 79, both hemispheres 978.2
2048 Male, age 55, midline 843.5
2816 Male, age 47, midline 815.2
2565 Male, age 75, midline 767.7
Cervical spinal cord, dorsal horn
nTPM: 1165.5
2296 Male, age 66, both hemispheres 1515.6
2173 Female, age 72, unknown 1514.8
2069 Male, age 47, both hemispheres 1177.5
2721 Male, age 90, both hemispheres 997.7
1877 Male, age 55, unknown 968.2
2297 Male, age 75, both hemispheres 819.2
Cervical spinal cord, ventral horn
nTPM: 963.3
2098 Female, age 72, unknown 1279.0
2068 Male, age 55, unknown 1047.9
2295 Male, age 66, both hemispheres 928.3
2809 Male, age 90, both hemispheres 877.1
2480 Male, age 75, both hemispheres 844.9
2820 Female, age 79, both hemispheres 802.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1813.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1813.5
Samples: 204

Max nTPM: 4501.2
Min nTPM: 749.6
Std nTPM: 469.6
Median nTPM: 1838.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 4501.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 3231.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 3202.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 2917.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 2879.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 2797.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 2785.8
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 2722.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 2519.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 2459.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 2416.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 2406.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 2399.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 2389.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 2344.2
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 2341.8
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 2331.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 2328.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 2303.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 2300.4
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 2294.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 2290.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 2231.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 2214.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 2205.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 2191.7
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 2188.7
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 2188.0
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 2187.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 2179.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 2163.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 2159.6
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 2156.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 2141.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 2138.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 2136.2
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 2128.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 2119.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 2111.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 2109.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 2101.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 2096.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 2092.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 2089.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 2088.9
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 2088.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 2081.1
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 2078.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2071.1
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 2070.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 2068.4
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 2067.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 2061.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 2061.0
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 2058.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 2056.7
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 2054.4
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 2045.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 2043.9
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 2041.3
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 2036.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 2033.6
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 2033.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 2030.5
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 2024.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 2015.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 2013.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 2013.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 2006.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 2005.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 2005.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 2002.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 2001.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 1995.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1986.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1980.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1963.2
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 1962.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1958.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1954.2
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 1953.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1948.9
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 1932.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1928.9
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 1919.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 1915.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1914.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1910.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1904.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1900.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1883.5
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 1869.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 1868.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 1868.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1860.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1860.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1857.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1855.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1855.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 1851.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1848.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1842.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1835.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 1834.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1832.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 1826.4
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 1823.4
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 1823.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 1815.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1812.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1807.0
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 1797.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1784.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1753.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1749.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1749.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1743.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 1737.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1735.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1734.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1733.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1729.9
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 1715.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1715.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 1709.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 1699.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1697.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1696.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 1690.5
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 1684.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1674.9
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 1671.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1663.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1652.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 1649.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1646.4
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 1643.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 1637.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1633.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1632.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1631.8
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 1625.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 1624.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1612.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1599.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1596.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1593.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1580.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1580.1
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 1576.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1567.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1544.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 1542.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1537.2
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 1528.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 1523.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1515.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1504.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1502.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1498.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1474.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1474.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1464.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1439.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1427.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1423.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1415.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1402.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1383.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1359.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1359.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1344.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1339.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1339.5
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 1331.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 1303.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1303.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1291.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1290.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1287.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 1268.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1262.1
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 1228.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1220.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1213.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1193.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1173.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1167.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1159.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 1148.5
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 1092.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1041.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1029.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1016.6
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 1012.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 1005.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 1001.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 956.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 941.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 901.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 883.7
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 859.6
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 806.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 749.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

457.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 457.3
FF:10181-103D1 60 years, female 556.3
FF:10159-103A6 76 years, female 358.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2427.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 2106.9
Samples: 4

Max nTPM: 2334.1
Min nTPM: 1934.0
Sample A Female 2057.1
Sample B Female 2102.4
Sample C Male 2334.1
Sample D Male 1934.0
Ventral spinal cord
nTPM: 2427.1
Samples: 4

Max nTPM: 2920.3
Min nTPM: 2122.7
Sample A Female 2271.9
Sample B Female 2920.3
Sample C Male 2393.3
Sample D Male 2122.7

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