MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1702.2 nTPM
HPA Brain:1381.6 nTPM
GTEx:1702.2 nTPM
FANTOM5:404.7 Scaled Tags Per Million
Pig:2216.7 nTPM
Mouse:2193.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 1381.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 817.2
2219 Male, age 76, both hemispheres 991.0
1870 Female, age 42, unknown 944.0
2411 Female, age 72, unknown 883.7
1827 Male, age 72, unknown 865.4
2828 Female, age 72, unknown 827.1
1833 Male, age 53, unknown 817.8
2019 Male, age 18, unknown 748.8
1830 Male, age 51, unknown 747.1
2666 Male, age 74, left hemisphere 707.6
2586 Male, age 75, left hemisphere 639.9
Dorsal raphe nucleus
nTPM: 995.1
2298 Female, age 72, unknown 1284.7
2047 Male, age 72, unknown 1044.3
2750 Male, age 76, both hemispheres 985.1
1828 Male, age 53, unknown 865.5
2016 Female, age 72, unknown 796.1
Inferior colliculus
nTPM: 775.9
2097 Female, age 72, unknown 877.0
1848 Female, age 42, unknown 771.9
1890 Male, age 53, unknown 739.2
2849 Male, age 72, unknown 715.4
Median raphe nucleus
nTPM: 1381.6
2220 Male, age 76, midline 1381.6
Periaquaductal grey, anterior
nTPM: 899.2
1947 Male, age 18, unknown 1019.7
1795 Male, age 51, unknown 850.9
2502 Female, age 75, unknown 827.0
Periaquaductal grey, dorsal
nTPM: 740.1
2850 Male, age 76, both hemispheres 865.9
1840 Male, age 53, unknown 800.6
1831 Male, age 72, unknown 701.3
2464 Female, age 72, unknown 592.4
Periaquaductal grey, lateral
nTPM: 812.4
2272 Male, age 74, both hemispheres 977.4
2053 Male, age 18, unknown 753.1
2140 Male, age 76, both hemispheres 706.8
Pretectal area
nTPM: 901.3
2224 Female, age 72, unknown 1070.2
2273 Male, age 74, both hemispheres 1033.1
2667 Female, age 75, unknown 997.2
1944 Female, age 72, unknown 963.8
1817 Female, age 42, unknown 958.6
2007 Male, age 72, unknown 902.6
1816 Male, age 51, unknown 891.3
1815 Male, age 53, unknown 853.5
2825 Male, age 18, unknown 795.9
2407 Male, age 75, both hemispheres 793.3
2316 Male, age 76, right hemisphere 655.0
Red nucleus
nTPM: 818.5
1821 Female, age 72, unknown 1091.7
1865 Male, age 51, unknown 957.7
1904 Male, age 53, unknown 943.6
2503 Female, age 72, unknown 911.9
1954 Female, age 42, unknown 903.8
2769 Male, age 72, unknown 817.9
2227 Male, age 72, unknown 806.4
2725 Female, age 75, unknown 804.2
2785 Male, age 18, unknown 794.0
2823 Male, age 76, right hemisphere 647.4
2584 Male, age 75, left hemisphere 595.7
2588 Male, age 74, left hemisphere 547.1
Substantia nigra
nTPM: 1023.2
1916 Female, age 42, unknown 1512.4
1851 Male, age 51, unknown 1216.6
2699 Male, age 18, unknown 1154.4
1941 Male, age 53, unknown 1099.9
2241 Male, age 72, unknown 1073.4
1889 Female, age 72, unknown 1051.8
2409 Female, age 72, unknown 906.0
2665 Male, age 74, both hemispheres 810.5
2590 Female, age 75, unknown 731.9
2583 Male, age 75, right hemisphere 674.8
Superior colliculus
nTPM: 821.2
2668 Female, age 75, unknown 1072.8
2587 Male, age 74, left hemisphere 928.7
1796 Male, age 53, unknown 894.0
1913 Female, age 42, unknown 828.0
2261 Male, age 18, unknown 809.4
2087 Female, age 72, unknown 787.5
1895 Male, age 76, right hemisphere 774.2
1995 Male, age 72, unknown 727.1
1839 Male, age 51, unknown 714.5
2664 Male, age 75, both hemispheres 676.0
Ventral tegmental area
nTPM: 1018.5
2218 Male, age 76, both hemispheres 1229.9
1915 Female, age 42, unknown 1213.5
2223 Female, age 72, unknown 996.0
2410 Female, age 72, unknown 975.6
1942 Male, age 51, unknown 900.6
2021 Male, age 53, unknown 795.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1702.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1702.2
Samples: 183

Max nTPM: 3092.4
Min nTPM: 802.9
Std nTPM: 439.0
Median nTPM: 1591.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 3092.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 3039.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 2905.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 2807.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 2762.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2736.1
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 2705.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 2671.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 2654.1
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 2609.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 2561.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 404.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 404.7
FF:10158-103A5 76 years, female 404.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 2216.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2087.2
Samples: 4

Max nTPM: 2932.0
Min nTPM: 1589.9
Sample A Female 2932.0
Sample B Female 1866.9
Sample C Male 1960.1
Sample D Male 1589.9
Midbrain
nTPM: 2105.5
Samples: 4

Max nTPM: 2535.6
Min nTPM: 1723.0
Sample A Female 2535.6
Sample B Female 2131.7
Sample C Male 2031.5
Sample D Male 1723.0
Periaqueductal gray
nTPM: 1785.0
Samples: 3

Max nTPM: 1925.5
Min nTPM: 1563.0
Sample B Female 1925.5
Sample C Male 1866.4
Sample D Male 1563.0
Superior colliculi
nTPM: 2216.7
Samples: 4

Max nTPM: 2667.7
Min nTPM: 1898.3
Sample A Female 2667.7
Sample B Female 1990.0
Sample C Male 2310.8
Sample D Male 1898.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2193.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 2193.0
Samples: 4

Max nTPM: 2314.1
Min nTPM: 2092.3
Sample A Male 2249.9
Sample B Male 2092.3
Sample C Female 2115.6
Sample D Female 2314.1

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