BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.9 nTPM
HPA Brain:55.7 nTPM
GTEx:23.9 nTPM
FANTOM5:171.0 Scaled Tags Per Million
Pig:91.9 nTPM
Mouse:190.4 nTPM
Allen mouse:5.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 55.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.6
2288 Male, age 75, left hemisphere 44.2
1857 Female, age 85, left hemisphere 42.6
2290 Female, age 72, unknown 40.1
1854 Male, age 80, left hemisphere 39.7
1781 Male, age 74, unknown 32.9
2289 Male, age 61, right hemisphere 26.4
2481 Female, age 94, left hemisphere 22.7
2846 Female, age 79, unknown 19.9
Globus pallidus, externus
nTPM: 11.4
2772 Female, age 79, unknown 18.8
2567 Female, age 72, unknown 11.9
2395 Male, age 75, both hemispheres 9.8
2646 Male, age 61, right hemisphere 9.4
1996 Male, age 80, right hemisphere 7.1
Globus pallidus, internus
nTPM: 10.4
1818 Male, age 74, unknown 19.1
2566 Female, age 72, unknown 13.3
2483 Female, age 94, right hemisphere 12.7
2037 Male, age 80, right hemisphere 10.1
2287 Male, age 75, right hemisphere 7.0
2111 Female, age 85, right hemisphere 6.6
2778 Female, age 91, both hemispheres 4.2
Nucleus accumbens
nTPM: 43.8
1856 Female, age 91, right hemisphere 77.4
2698 Female, age 72, unknown 49.7
1806 Female, age 85, left hemisphere 46.7
2824 Male, age 61, right hemisphere 46.0
2286 Male, age 75, left hemisphere 37.4
1783 Male, age 74, unknown 36.2
2732 Male, age 80, right hemisphere 36.0
2391 Female, age 94, left hemisphere 21.0
Nucleus basalis of Meynert
nTPM: 21.8
2393 Male, age 80, right hemisphere 28.2
2484 Female, age 94, left hemisphere 27.7
2821 Male, age 75, both hemispheres 23.5
2569 Male, age 61, both hemispheres 7.8
Nucleus of the diagonal band
nTPM: 55.7
1979 Male, age 74, unknown 75.4
1812 Female, age 91, both hemispheres 54.0
2195 Female, age 85, both hemispheres 53.7
2029 Male, age 61, right hemisphere 50.0
2775 Male, age 80, right hemisphere 45.5
Putamen
nTPM: 23.7
1838 Male, age 80, right hemisphere 44.9
1937 Female, age 91, right hemisphere 44.3
1829 Male, age 74, unknown 19.9
2482 Female, age 94, left hemisphere 17.5
2466 Female, age 79, unknown 15.1
2647 Male, age 75, left hemisphere 13.7
2489 Female, age 72, unknown 10.8
Septal nuclei
nTPM: 50.4
2031 Female, age 72, unknown 59.3
2629 Female, age 94, right hemisphere 59.0
2009 Female, age 91, both hemispheres 56.6
2199 Male, age 80, right hemisphere 50.7
1960 Male, age 74, unknown 47.8
2394 Male, age 61, left hemisphere 40.0
2059 Female, age 85, both hemispheres 39.1
Stria terminalis, bed nucleus
nTPM: 44.5
2486 Female, age 94, both hemispheres 52.9
2201 Male, age 74, unknown 45.7
1974 Female, age 91, both hemispheres 34.8

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 23.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 13.8
Samples: 300

Max nTPM: 66.0
Min nTPM: 0.1
Std nTPM: 9.1
Median nTPM: 12.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 66.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 36.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 35.9
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 35.6
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 34.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 34.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 33.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 33.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 32.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 32.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 31.9
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 23.9
Samples: 285

Max nTPM: 58.3
Min nTPM: 0.7
Std nTPM: 13.2
Median nTPM: 23.8
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 58.3
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 57.5
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 56.8
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 56.3
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 54.6
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 54.3
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 53.0
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 53.0
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 50.7
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 50.4
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 50.2
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 9.6
Samples: 254

Max nTPM: 31.4
Min nTPM: 0.3
Std nTPM: 6.9
Median nTPM: 8.2
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 31.4
GTEX-1JMQJ-0011-R7b-SM-F2TA7 50-59 years, male 29.7
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 29.1
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 28.5
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 27.8
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 27.0
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 25.9
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 24.0
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 23.3
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 22.5
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 21.8
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 171.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 169.7
FF:10164-103B2 76 years, female 169.7
Nucleus accumbens
Scaled Tags Per Million: 145.2
FF:10037-101F1 23-56 years, mixed 145.2
Putamen
Scaled Tags Per Million: 171.0
FF:10176-103C5 60 years, female 171.0
Globus pallidus
Scaled Tags Per Million: 38.1
FF:10175-103C4 60 years, female 58.8
FF:10161-103A8 76 years, female 17.4

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 91.9
Pig sample Sample description nTPM
Caudate
nTPM: 58.1
Samples: 4

Max nTPM: 62.6
Min nTPM: 51.1
Sample A Female 62.6
Sample B Female 57.2
Sample C Male 61.6
Sample D Male 51.1
Putamen
nTPM: 57.8
Samples: 4

Max nTPM: 67.5
Min nTPM: 39.4
Sample A Female 67.5
Sample B Female 39.4
Sample C Male 66.9
Sample D Male 57.4
Septum
nTPM: 91.9
Samples: 4

Max nTPM: 103.0
Min nTPM: 85.8
Sample A Female 85.8
Sample B Female 85.9
Sample C Male 103.0
Sample D Male 92.8
Ventral pallidum
nTPM: 81.5
Samples: 4

Max nTPM: 114.7
Min nTPM: 61.6
Sample A Female 68.4
Sample B Female 81.1
Sample C Male 114.7
Sample D Male 61.6

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 190.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 86.3
Samples: 4

Max nTPM: 93.1
Min nTPM: 79.0
Sample A Male 86.9
Sample B Male 86.3
Sample C Female 79.0
Sample D Female 93.1
Septum
nTPM: 190.4
Samples: 4

Max nTPM: 208.9
Min nTPM: 169.5
Sample A Male 169.5
Sample B Male 208.9
Sample C Female 193.1
Sample D Female 189.9
Ventral forebrain
nTPM: 137.0
Samples: 4

Max nTPM: 163.3
Min nTPM: 121.4
Sample A Male 121.4
Sample B Male 163.3
Sample C Female 140.1
Sample D Female 123.1

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 5.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.7
71836843 Antisense, RP_051017_02_C06, Mouse strain C57BL/6J (56 days, male) 4.3
68157400 Antisense, RP_041116_02_E03, Mouse strain C57BL/6J (56 days, male) 1.1
Pallidum
Expression energy: 5.1
71836843 Antisense, RP_051017_02_C06, Mouse strain C57BL/6J (56 days, male) 8.1
68157400 Antisense, RP_041116_02_E03, Mouse strain C57BL/6J (56 days, male) 2.1

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo