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  • PFKFB3
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:55.3 nTPM
HPA Brain:217.1 nTPM
GTEx:55.3 nTPM
FANTOM5:368.7 Scaled Tags Per Million
Pig:32.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

217.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 189.2
2048 Male, age 55, midline 206.8
2194 Female, age 79, both hemispheres 196.2
2816 Male, age 47, midline 184.7
1981 Female, age 72, midline 181.1
2565 Male, age 75, midline 177.4
Cervical spinal cord, dorsal horn
nTPM: 180.7
2721 Male, age 90, both hemispheres 217.4
2069 Male, age 47, both hemispheres 191.7
2296 Male, age 66, both hemispheres 186.0
1877 Male, age 55, unknown 184.0
2173 Female, age 72, unknown 171.4
2297 Male, age 75, both hemispheres 133.5
Cervical spinal cord, ventral horn
nTPM: 217.1
2098 Female, age 72, unknown 314.2
2809 Male, age 90, both hemispheres 312.3
2295 Male, age 66, both hemispheres 175.1
2820 Female, age 79, both hemispheres 168.3
2068 Male, age 55, unknown 167.9
2480 Male, age 75, both hemispheres 164.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

55.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 55.3
Samples: 204

Max nTPM: 179.5
Min nTPM: 16.2
Std nTPM: 31.0
Median nTPM: 46.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 179.5
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 164.0
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 156.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 149.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 149.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 145.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 143.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 130.4
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 123.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 121.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 114.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 114.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 111.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 110.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 108.5
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 106.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 105.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 105.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 103.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 101.6
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 100.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 97.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 96.7
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 96.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 94.7
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 92.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 92.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 92.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 90.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 88.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 85.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 85.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 83.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 83.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 81.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 81.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 81.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 80.7
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 80.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 80.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 79.4
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 79.0
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 77.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 75.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 74.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 69.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 68.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 67.0
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 66.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 66.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 66.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 65.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 63.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 63.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 63.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 62.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 62.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 60.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 59.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 59.4
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 59.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 59.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 59.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 58.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 58.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 57.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 57.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 57.0
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 56.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 56.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 56.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 55.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 55.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 55.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 54.5
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 54.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 54.1
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 54.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 53.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 53.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 53.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 53.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 53.1
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 52.7
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 52.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 52.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 51.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 50.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 50.7
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 50.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 49.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 49.8
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 49.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 49.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 49.3
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 48.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 48.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 47.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 47.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 47.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 47.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 47.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 45.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 45.0
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 44.8
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 44.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 44.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 44.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 44.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 43.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 43.4
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 43.1
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 42.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 42.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 42.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 42.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 42.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 41.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 41.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 41.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 41.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 40.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 40.6
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 40.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 40.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 40.0
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 39.5
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 39.2
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 39.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 39.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 38.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 38.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 38.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 37.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 37.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 37.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 36.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 36.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 36.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 36.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 36.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 36.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 36.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 35.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 35.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 35.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 35.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 34.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 34.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 34.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 33.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 33.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 33.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 33.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 33.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 33.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 32.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 32.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 32.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 31.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 31.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 31.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 31.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 31.4
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 31.2
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 31.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 30.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 30.8
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 30.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 30.5
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 29.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 29.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 29.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 28.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 28.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 28.3
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 28.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 27.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 27.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 27.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 26.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 26.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 26.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 26.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 26.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 25.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 25.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 25.6
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 25.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 25.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 24.3
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 23.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 23.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 23.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 23.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 22.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 22.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 22.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 22.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 20.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 20.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 18.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 16.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 16.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

368.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 368.7
FF:10159-103A6 76 years, female 381.9
FF:10181-103D1 60 years, female 355.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 19.2
Samples: 4

Max nTPM: 24.6
Min nTPM: 14.6
Sample A Female 21.1
Sample B Female 14.6
Sample C Male 16.3
Sample D Male 24.6
Ventral spinal cord
nTPM: 32.5
Samples: 4

Max nTPM: 37.9
Min nTPM: 28.1
Sample A Female 37.9
Sample B Female 32.8
Sample C Male 31.0
Sample D Male 28.1

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