MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:59.2 nTPM
HPA Brain:239.1 nTPM
GTEx:59.2 nTPM
FANTOM5:186.2 Scaled Tags Per Million
Pig:20.4 nTPM
Mouse:24.5 nTPM
Allen mouse:2.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 239.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 173.8
2586 Male, age 75, left hemisphere 295.2
2828 Female, age 72, unknown 196.8
1830 Male, age 51, unknown 184.5
1833 Male, age 53, unknown 180.0
1870 Female, age 42, unknown 172.3
2411 Female, age 72, unknown 168.6
1827 Male, age 72, unknown 161.0
2666 Male, age 74, left hemisphere 157.1
2019 Male, age 18, unknown 127.9
2219 Male, age 76, both hemispheres 94.0
Dorsal raphe nucleus
nTPM: 193.3
2016 Female, age 72, unknown 229.2
1828 Male, age 53, unknown 200.4
2047 Male, age 72, unknown 197.5
2298 Female, age 72, unknown 196.5
2750 Male, age 76, both hemispheres 142.8
Inferior colliculus
nTPM: 178.5
1848 Female, age 42, unknown 207.9
2849 Male, age 72, unknown 189.4
1890 Male, age 53, unknown 161.2
2097 Female, age 72, unknown 155.7
Median raphe nucleus
nTPM: 157.9
2220 Male, age 76, midline 157.9
Periaquaductal grey, anterior
nTPM: 200.8
1947 Male, age 18, unknown 234.5
1795 Male, age 51, unknown 204.3
2502 Female, age 75, unknown 163.5
Periaquaductal grey, dorsal
nTPM: 207.0
2850 Male, age 76, both hemispheres 225.5
1840 Male, age 53, unknown 218.0
2464 Female, age 72, unknown 193.6
1831 Male, age 72, unknown 190.9
Periaquaductal grey, lateral
nTPM: 239.1
2140 Male, age 76, both hemispheres 254.2
2053 Male, age 18, unknown 238.5
2272 Male, age 74, both hemispheres 224.7
Pretectal area
nTPM: 176.3
2407 Male, age 75, both hemispheres 238.9
2316 Male, age 76, right hemisphere 213.1
2273 Male, age 74, both hemispheres 206.2
2825 Male, age 18, unknown 202.4
2667 Female, age 75, unknown 186.8
2224 Female, age 72, unknown 175.8
1944 Female, age 72, unknown 156.0
1815 Male, age 53, unknown 153.4
1817 Female, age 42, unknown 152.7
1816 Male, age 51, unknown 128.2
2007 Male, age 72, unknown 126.1
Red nucleus
nTPM: 175.3
1954 Female, age 42, unknown 204.9
2725 Female, age 75, unknown 198.8
2769 Male, age 72, unknown 191.3
2227 Male, age 72, unknown 188.2
1865 Male, age 51, unknown 185.1
2584 Male, age 75, left hemisphere 182.3
1904 Male, age 53, unknown 177.4
2588 Male, age 74, left hemisphere 175.9
2823 Male, age 76, right hemisphere 159.3
1821 Female, age 72, unknown 153.6
2503 Female, age 72, unknown 150.9
2785 Male, age 18, unknown 136.3
Substantia nigra
nTPM: 195.1
2699 Male, age 18, unknown 258.5
2583 Male, age 75, right hemisphere 229.8
2590 Female, age 75, unknown 209.6
1916 Female, age 42, unknown 206.6
2241 Male, age 72, unknown 199.4
2409 Female, age 72, unknown 197.2
2665 Male, age 74, both hemispheres 178.8
1851 Male, age 51, unknown 176.2
1941 Male, age 53, unknown 156.8
1889 Female, age 72, unknown 138.3
Superior colliculus
nTPM: 168.0
2664 Male, age 75, both hemispheres 219.7
1913 Female, age 42, unknown 188.8
1995 Male, age 72, unknown 187.8
1839 Male, age 51, unknown 181.2
1796 Male, age 53, unknown 179.9
2587 Male, age 74, left hemisphere 155.8
2087 Female, age 72, unknown 150.6
2668 Female, age 75, unknown 149.7
2261 Male, age 18, unknown 149.0
1895 Male, age 76, right hemisphere 117.6
Ventral tegmental area
nTPM: 171.9
2021 Male, age 53, unknown 197.1
1942 Male, age 51, unknown 190.5
1915 Female, age 42, unknown 176.9
2218 Male, age 76, both hemispheres 171.6
2410 Female, age 72, unknown 149.5
2223 Female, age 72, unknown 145.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 59.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.2
Samples: 183

Max nTPM: 162.5
Min nTPM: 13.7
Std nTPM: 28.7
Median nTPM: 51.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 162.5
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 162.2
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 156.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 149.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 143.3
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 143.3
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 135.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 126.9
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 125.4
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 123.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 122.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 186.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 186.2
FF:10158-103A5 76 years, female 186.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 20.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.3
Samples: 4

Max nTPM: 25.8
Min nTPM: 13.9
Sample A Female 25.8
Sample B Female 13.9
Sample C Male 18.5
Sample D Male 19.0
Midbrain
nTPM: 20.4
Samples: 4

Max nTPM: 24.6
Min nTPM: 18.5
Sample A Female 24.6
Sample B Female 19.4
Sample C Male 18.9
Sample D Male 18.5
Periaqueductal gray
nTPM: 19.7
Samples: 3

Max nTPM: 20.7
Min nTPM: 18.2
Sample B Female 20.7
Sample C Male 20.2
Sample D Male 18.2
Superior colliculi
nTPM: 19.1
Samples: 4

Max nTPM: 24.1
Min nTPM: 11.9
Sample A Female 24.1
Sample B Female 11.9
Sample C Male 17.8
Sample D Male 22.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 24.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.5
Samples: 4

Max nTPM: 25.8
Min nTPM: 22.7
Sample A Male 22.7
Sample B Male 25.8
Sample C Female 24.1
Sample D Female 25.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.9
74657950 Antisense, RP_060220_02_F11, Mouse strain C57BL/6J (56 days, male) 3.8
69838358 Antisense, RP_050301_02_E09, Mouse strain C57BL/6J (56 days, male) 2.0

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