A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
79.1
nTPM
Monaco:
97.1
nTPM
Schmiedel:
36.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
79.1
HPA sample
nTPM
NK-cell nTPM: 79.1
Samples: 6
Max nTPM: 110.3
Min nTPM: 46.7
P10809_1013
46.7
P10809_1033
75.8
P10809_1052
69.3
P10809_1071
110.3
P10809_1093
83.4
P10809_1103
89.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
97.1
Monaco sample
nTPM
NK-cell nTPM: 97.1
Samples: 4
Max nTPM: 115.0
Min nTPM: 86.7
RHH5316_R3683
93.4
RHH5224_R3596
86.7
RHH5253_R3625
93.1
RHH5282_R3654
115.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.6
Schmiedel sample id
TPM
NK-cell TPM: 36.6
Samples: 90
Max TPM: 48.0
Min TPM: 29.6
NK_1
48.0
NK_2
45.7
NK_3
43.9
NK_4
43.0
NK_5
42.3
NK_6
41.7
NK_7
41.0
NK_8
40.9
NK_9
40.9
NK_10
40.3
NK_11
40.2
NK_12
40.1
NK_13
40.0
NK_14
39.9
NK_15
39.9
NK_16
39.8
NK_17
39.8
NK_18
39.6
NK_19
39.4
NK_20
39.3
NK_21
39.2
NK_22
38.7
NK_23
38.4
NK_24
38.4
NK_25
38.4
NK_26
38.3
NK_27
38.2
NK_28
38.1
NK_29
38.1
NK_30
38.0
NK_31
38.0
NK_32
38.0
NK_33
37.6
NK_34
37.4
NK_35
37.2
NK_36
37.0
NK_37
36.8
NK_38
36.8
NK_39
36.8
NK_40
36.7
NK_41
36.6
NK_42
36.6
NK_43
36.5
NK_44
36.5
NK_45
36.4
NK_46
36.4
NK_47
36.4
NK_48
36.3
NK_49
36.3
NK_50
36.2
NK_51
36.0
NK_52
36.0
NK_53
36.0
NK_54
36.0
NK_55
35.8
NK_56
35.7
NK_57
35.4
NK_58
35.4
NK_59
35.1
NK_60
35.0
NK_61
34.9
NK_62
34.8
NK_63
34.7
NK_64
34.6
NK_65
34.4
NK_66
34.3
NK_67
34.3
NK_68
34.0
NK_69
34.0
NK_70
33.9
NK_71
33.5
NK_72
33.4
NK_73
33.2
NK_74
33.1
NK_75
33.0
NK_76
33.0
NK_77
32.9
NK_78
32.9
NK_79
32.7
NK_80
32.7
NK_81
32.4
NK_82
32.4
NK_83
32.3
NK_84
31.8
NK_85
31.8
NK_86
31.7
NK_87
31.5
NK_88
31.3
NK_89
31.1
NK_90
29.6
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