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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:401.9 nTPM
HPA Brain:25.2 nTPM
GTEx:401.9 nTPM
FANTOM5:195.6 Scaled Tags Per Million
Mouse:257.3 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

25.2
Sample id Sample description nTPM
Amygdala
nTPM: 19.1
2517 Female, age 94, left hemisphere 25.9
2695 Female, age 67, right hemisphere 23.5
2814 Male, age 76, right hemisphere 17.4
2514 Male, age 75, right hemisphere 17.2
1987 Female, age 91, left hemisphere 11.6
Basal amygdala
nTPM: 23.4
2827 Female, age 67, right hemisphere 35.4
2685 Female, age 94, left hemisphere 30.5
1955 Male, age 76, both hemispheres 24.5
2110 Male, age 80, left hemisphere 19.3
2609 Male, age 75, right hemisphere 16.6
2243 Female, age 91, right hemisphere 14.0
Central amygdala
nTPM: 24.1
2701 Female, age 91, right hemisphere 28.9
2515 Male, age 75, right hemisphere 27.9
2826 Female, age 94, left hemisphere 24.9
1905 Male, age 76, both hemispheres 19.6
2239 Male, age 80, left hemisphere 19.2
Corticomedial amygdala
nTPM: 22.8
2535 Female, age 67, right hemisphere 34.3
2240 Male, age 76, both hemispheres 26.1
2428 Male, age 75, right hemisphere 21.9
2242 Female, age 91, right hemisphere 21.3
2429 Female, age 94, left hemisphere 17.2
2829 Male, age 80, left hemisphere 15.8
Lateral amygdala
nTPM: 25.2
2255 Female, age 91, right hemisphere 35.0
2256 Male, age 80, left hemisphere 33.3
2830 Female, age 67, right hemisphere 24.8
1883 Male, age 76, both hemispheres 22.2
2534 Female, age 94, left hemisphere 18.6
2516 Male, age 75, right hemisphere 17.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

401.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 401.9
Samples: 181

Max nTPM: 1017.0
Min nTPM: 192.0
Std nTPM: 138.2
Median nTPM: 380.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1017.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 990.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 953.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 933.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 819.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 716.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 682.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 670.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 653.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 631.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 630.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 621.1
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 610.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 602.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 576.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 566.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 555.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 555.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 550.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 548.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 547.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 541.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 516.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 515.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 506.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 501.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 496.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 493.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 493.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 487.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 482.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 479.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 478.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 477.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 476.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 475.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 475.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 475.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 473.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 472.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 471.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 468.0
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 463.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 460.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 459.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 457.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 454.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 452.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 449.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 449.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 445.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 445.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 445.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 440.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 435.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 434.0
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 433.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 432.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 432.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 431.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 431.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 427.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 426.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 424.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 423.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 423.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 422.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 421.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 418.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 417.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 417.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 413.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 413.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 411.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 408.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 408.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 407.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 407.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 405.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 403.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 401.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 400.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 399.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 397.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 396.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 387.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 386.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 386.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 386.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 383.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 380.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 377.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 375.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 374.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 374.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 374.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 372.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 365.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 363.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 358.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 357.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 355.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 354.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 353.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 350.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 349.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 349.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 349.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 345.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 344.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 344.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 342.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 341.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 338.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 338.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 338.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 338.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 336.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 334.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 333.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 333.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 332.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 331.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 329.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 328.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 327.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 323.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 322.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 320.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 320.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 319.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 318.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 312.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 312.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 311.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 310.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 307.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 306.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 306.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 306.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 303.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 301.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 297.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 294.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 293.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 291.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 288.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 288.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 288.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 287.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 287.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 285.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 284.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 283.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 282.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 281.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 280.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 280.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 274.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 271.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 270.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 268.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 268.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 266.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 265.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 262.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 262.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 259.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 259.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 246.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 242.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 240.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 232.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 227.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 222.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 215.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 214.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 207.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 202.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 201.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 192.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

195.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 195.6
FF:10151-102I7 76 years, female 195.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

257.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 257.4
Samples: 4

Max nTPM: 277.5
Min nTPM: 244.3
Sample A Male 244.3
Sample B Male 255.2
Sample C Female 277.5
Sample D Female 252.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.4
73716566 Antisense, RP_051206_03_C11, Mouse strain C57BL/6J (56 days, male) 0.4

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