A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.9
nTPM
Monaco:
11.5
nTPM
Schmiedel:
9.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.9
HPA sample
nTPM
Classical monocyte nTPM: 0.9
Samples: 6
Max nTPM: 1.8
Min nTPM: 0.5
P10809_1003
0.5
P10809_1020
1.8
P10809_1039
0.7
P10809_1058
0.8
P10809_1080
0.6
P10809_1107
0.8
Intermediate monocyte nTPM: 0.5
Samples: 6
Max nTPM: 1.4
Min nTPM: 0.0
P10809_1004
0.0
P10809_1023
0.0
P10809_1042
1.4
P10809_1061
0.1
P10809_1081
0.4
P10809_1108
0.9
Non-classical monocyte nTPM: 0.4
Samples: 5
Max nTPM: 1.4
Min nTPM: 0.0
P10809_1005
0.5
P10809_1053
0.1
P10809_1072
0.0
P10809_1082
0.2
P10809_1109
1.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.5
Monaco sample
nTPM
Classical monocyte nTPM: 11.5
Samples: 4
Max nTPM: 14.3
Min nTPM: 7.9
RHH5313_R3680
7.9
RHH5221_R3593
10.2
RHH5250_R3622
13.6
RHH5279_R3651
14.3
Intermediate monocyte nTPM: 3.1
Samples: 4
Max nTPM: 4.8
Min nTPM: 1.5
RHH5314_R3681
3.4
RHH5222_R3594
4.8
RHH5251_R3623
1.5
RHH5280_R3652
2.7
Non-classical monocyte nTPM: 4.1
Samples: 4
Max nTPM: 5.9
Min nTPM: 2.2
RHH5315_R3682
5.1
RHH5223_R3595
5.9
RHH5252_R3624
3.0
RHH5281_R3653
2.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.5
Schmiedel sample id
TPM
Classical monocyte TPM: 9.5
Samples: 91
Max TPM: 13.9
Min TPM: 5.1
MONOCYTES_1
13.9
MONOCYTES_2
13.3
MONOCYTES_3
13.2
MONOCYTES_4
12.6
MONOCYTES_5
12.5
MONOCYTES_6
12.0
MONOCYTES_7
11.9
MONOCYTES_8
11.8
MONOCYTES_9
11.8
MONOCYTES_10
11.5
MONOCYTES_11
11.3
MONOCYTES_12
11.2
MONOCYTES_13
11.2
MONOCYTES_14
11.0
MONOCYTES_15
10.9
MONOCYTES_16
10.9
MONOCYTES_17
10.8
MONOCYTES_18
10.8
MONOCYTES_19
10.8
MONOCYTES_20
10.7
MONOCYTES_21
10.7
MONOCYTES_22
10.7
MONOCYTES_23
10.6
MONOCYTES_24
10.6
MONOCYTES_25
10.6
MONOCYTES_26
10.6
MONOCYTES_27
10.4
MONOCYTES_28
10.4
MONOCYTES_29
10.4
MONOCYTES_30
10.3
MONOCYTES_31
10.3
MONOCYTES_32
10.3
MONOCYTES_33
10.2
MONOCYTES_34
10.1
MONOCYTES_35
10.1
MONOCYTES_36
10.0
MONOCYTES_37
10.0
MONOCYTES_38
9.9
MONOCYTES_39
9.8
MONOCYTES_40
9.7
MONOCYTES_41
9.7
MONOCYTES_42
9.7
MONOCYTES_43
9.6
MONOCYTES_44
9.6
MONOCYTES_45
9.6
MONOCYTES_46
9.6
MONOCYTES_47
9.6
MONOCYTES_48
9.5
MONOCYTES_49
9.5
MONOCYTES_50
9.3
MONOCYTES_51
9.3
MONOCYTES_52
9.2
MONOCYTES_53
9.1
MONOCYTES_54
9.1
MONOCYTES_55
9.1
MONOCYTES_56
9.1
MONOCYTES_57
9.0
MONOCYTES_58
9.0
MONOCYTES_59
9.0
MONOCYTES_60
9.0
MONOCYTES_61
8.7
MONOCYTES_62
8.7
MONOCYTES_63
8.7
MONOCYTES_64
8.6
MONOCYTES_65
8.5
MONOCYTES_66
8.5
MONOCYTES_67
8.5
MONOCYTES_68
8.4
MONOCYTES_69
8.4
MONOCYTES_70
8.3
MONOCYTES_71
8.3
MONOCYTES_72
8.2
MONOCYTES_73
8.1
MONOCYTES_74
8.0
MONOCYTES_75
7.7
MONOCYTES_76
7.3
MONOCYTES_77
7.3
MONOCYTES_78
7.3
MONOCYTES_79
7.3
MONOCYTES_80
7.1
MONOCYTES_81
7.1
MONOCYTES_82
7.1
MONOCYTES_83
6.9
MONOCYTES_84
6.7
MONOCYTES_85
6.7
MONOCYTES_86
6.7
MONOCYTES_87
6.6
MONOCYTES_88
6.5
MONOCYTES_89
6.5
MONOCYTES_90
6.3
MONOCYTES_91
5.1
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Non-classical monocyte TPM: 4.1
Samples: 90
Max TPM: 7.9
Min TPM: 2.4
M2_1
7.9
M2_2
7.5
M2_3
6.2
M2_4
5.9
M2_5
5.6
M2_6
5.6
M2_7
5.6
M2_8
5.6
M2_9
5.4
M2_10
5.3
M2_11
5.3
M2_12
5.1
M2_13
5.1
M2_14
5.0
M2_15
4.9
M2_16
4.9
M2_17
4.9
M2_18
4.8
M2_19
4.8
M2_20
4.6
M2_21
4.6
M2_22
4.5
M2_23
4.5
M2_24
4.5
M2_25
4.5
M2_26
4.5
M2_27
4.5
M2_28
4.5
M2_29
4.4
M2_30
4.4
M2_31
4.4
M2_32
4.4
M2_33
4.4
M2_34
4.4
M2_35
4.3
M2_36
4.2
M2_37
4.2
M2_38
4.2
M2_39
4.1
M2_40
4.0
M2_41
4.0
M2_42
4.0
M2_43
4.0
M2_44
4.0
M2_45
4.0
M2_46
3.9
M2_47
3.9
M2_48
3.9
M2_49
3.8
M2_50
3.8
M2_51
3.8
M2_52
3.8
M2_53
3.8
M2_54
3.7
M2_55
3.7
M2_56
3.7
M2_57
3.7
M2_58
3.6
M2_59
3.6
M2_60
3.6
M2_61
3.6
M2_62
3.6
M2_63
3.6
M2_64
3.6
M2_65
3.5
M2_66
3.5
M2_67
3.4
M2_68
3.4
M2_69
3.4
M2_70
3.4
M2_71
3.4
M2_72
3.4
M2_73
3.3
M2_74
3.3
M2_75
3.2
M2_76
3.0
M2_77
3.0
M2_78
3.0
M2_79
3.0
M2_80
3.0
M2_81
3.0
M2_82
3.0
M2_83
2.9
M2_84
2.9
M2_85
2.9
M2_86
2.8
M2_87
2.6
M2_88
2.6
M2_89
2.4
M2_90
2.4
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