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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • EVOLUTION

  • PLRG1
EVOLUTIONARY AMYGDALA Show tissue menu
BRAIN66 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM10 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS
MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:16.3 nTPM
HPA Brain:25.4 nTPM
GTEx:16.3 nTPM
FANTOM5:56.2 Scaled Tags Per Million
Macaque:21.8 nTPM
Mouse:29.2 nTPM
Rat:16.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

25.4
Sample id Sample description nTPM
Basal amygdala
nTPM: 21.6
2609 Male, age 75, right hemisphere 26.5
2110 Male, age 80, left hemisphere 23.7
2243 Female, age 91, right hemisphere 23.2
1955 Male, age 76, both hemispheres 22.1
2685 Female, age 94, left hemisphere 18.9
2827 Female, age 67, right hemisphere 15.4
Central amygdala
nTPM: 25.4
2515 Male, age 75, right hemisphere 37.6
1905 Male, age 76, both hemispheres 24.3
2239 Male, age 80, left hemisphere 23.3
2701 Female, age 91, right hemisphere 21.6
2826 Female, age 94, left hemisphere 20.1
Corticomedial amygdala
nTPM: 23.2
2428 Male, age 75, right hemisphere 28.1
2829 Male, age 80, left hemisphere 26.6
2242 Female, age 91, right hemisphere 23.9
2240 Male, age 76, both hemispheres 23.7
2429 Female, age 94, left hemisphere 22.2
2535 Female, age 67, right hemisphere 14.7
Lateral amygdala
nTPM: 24.2
1883 Male, age 76, both hemispheres 30.3
2516 Male, age 75, right hemisphere 29.6
2256 Male, age 80, left hemisphere 24.5
2255 Female, age 91, right hemisphere 22.6
2830 Female, age 67, right hemisphere 19.6
2534 Female, age 94, left hemisphere 18.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

16.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 16.3
Samples: 181

Max nTPM: 29.6
Min nTPM: 7.9
Std nTPM: 3.4
Median nTPM: 15.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 29.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 27.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 26.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 24.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 24.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 23.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 22.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 22.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 22.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 22.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 22.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 21.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 21.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 21.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 21.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 21.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 21.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 20.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 20.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 20.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 20.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 19.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 19.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 19.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 19.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 19.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 19.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 19.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 19.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 19.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 19.1
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 19.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 19.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 18.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 18.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 18.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 18.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 18.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 18.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 18.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 18.5
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 18.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 18.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 18.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 18.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 18.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 18.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 18.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 18.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 18.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 17.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 17.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 17.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 17.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 17.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 17.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 17.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 17.6
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 17.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 17.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 17.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 17.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 17.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 17.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 17.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 17.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 17.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 17.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 17.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 17.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 17.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 16.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 16.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 16.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 16.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 16.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 16.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 16.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 16.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 16.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 16.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 16.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 16.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 16.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 16.1
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 16.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 16.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 16.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 16.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 15.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 15.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 15.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 15.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 15.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 15.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 15.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 15.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 15.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 15.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 15.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 15.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 15.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 15.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 15.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 15.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 15.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 15.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 15.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 15.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 14.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 14.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 14.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 14.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 14.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 14.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 14.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 14.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 14.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 14.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 14.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 14.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 14.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 14.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 14.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 14.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 14.3
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 14.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 14.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 14.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 14.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 14.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 14.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 14.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 14.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 14.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 14.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 14.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 14.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 14.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 13.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 13.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 13.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 13.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 13.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 13.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 13.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 13.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 13.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 13.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 13.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 13.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 13.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 13.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 13.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 13.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 13.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 12.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 12.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 12.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 12.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 12.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 12.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 12.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 12.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 12.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 12.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 11.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 11.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 11.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 11.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 11.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 11.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 11.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 11.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 11.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 10.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 10.7
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 10.4
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 9.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 8.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 7.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

56.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 56.2
FF:10151-102I7 76 years, female 56.2

AMYGDALA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

21.8
Macaque sample Sample description nTPM
Amygdala
nTPM: 21.8
Samples: 2

Max nTPM: 26.3
Min nTPM: 17.3
Sample A 17.3
Sample B 26.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

29.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 29.2
Samples: 4

Max nTPM: 33.4
Min nTPM: 26.8
Sample A 33.4
Sample B 26.8
Sample C 27.9
Sample D 28.6

AMYGDALA - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

16.0
Rat sample Sample description nTPM
Amygdala
nTPM: 16.1
Samples: 4

Max nTPM: 17.6
Min nTPM: 14.1
Sample A 17.6
Sample A 16.8
Sample A 15.7
Sample A 14.1

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