A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
17.9
nTPM
Monaco:
102.8
nTPM
Schmiedel:
148.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.9
HPA sample
nTPM
Classical monocyte nTPM: 13.4
Samples: 6
Max nTPM: 23.9
Min nTPM: 10.3
P10809_1003
23.9
P10809_1020
12.2
P10809_1039
10.3
P10809_1058
10.4
P10809_1080
12.0
P10809_1107
11.6
Intermediate monocyte nTPM: 15.4
Samples: 6
Max nTPM: 21.1
Min nTPM: 11.1
P10809_1004
21.1
P10809_1023
16.6
P10809_1042
16.2
P10809_1061
12.2
P10809_1081
11.1
P10809_1108
15.2
Non-classical monocyte nTPM: 17.9
Samples: 5
Max nTPM: 28.9
Min nTPM: 10.2
P10809_1005
28.9
P10809_1053
19.6
P10809_1072
13.4
P10809_1082
10.2
P10809_1109
17.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
102.8
Monaco sample
nTPM
Classical monocyte nTPM: 88.4
Samples: 4
Max nTPM: 91.2
Min nTPM: 84.3
RHH5313_R3680
91.2
RHH5221_R3593
90.8
RHH5250_R3622
84.3
RHH5279_R3651
87.2
Intermediate monocyte nTPM: 97.8
Samples: 4
Max nTPM: 133.1
Min nTPM: 77.8
RHH5314_R3681
77.8
RHH5222_R3594
133.1
RHH5251_R3623
90.9
RHH5280_R3652
89.5
Non-classical monocyte nTPM: 102.8
Samples: 4
Max nTPM: 116.2
Min nTPM: 88.0
RHH5315_R3682
88.0
RHH5223_R3595
116.2
RHH5252_R3624
104.9
RHH5281_R3653
102.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
148.7
Schmiedel sample id
TPM
Classical monocyte TPM: 134.4
Samples: 91
Max TPM: 185.4
Min TPM: 79.8
MONOCYTES_1
185.4
MONOCYTES_2
179.6
MONOCYTES_3
178.3
MONOCYTES_4
176.9
MONOCYTES_5
174.9
MONOCYTES_6
172.9
MONOCYTES_7
172.6
MONOCYTES_8
172.3
MONOCYTES_9
172.1
MONOCYTES_10
171.4
MONOCYTES_11
171.0
MONOCYTES_12
169.9
MONOCYTES_13
166.1
MONOCYTES_14
161.8
MONOCYTES_15
161.1
MONOCYTES_16
159.9
MONOCYTES_17
159.3
MONOCYTES_18
157.5
MONOCYTES_19
157.5
MONOCYTES_20
157.2
MONOCYTES_21
157.2
MONOCYTES_22
155.9
MONOCYTES_23
154.3
MONOCYTES_24
152.9
MONOCYTES_25
152.8
MONOCYTES_26
150.7
MONOCYTES_27
150.3
MONOCYTES_28
150.0
MONOCYTES_29
149.4
MONOCYTES_30
148.2
MONOCYTES_31
147.6
MONOCYTES_32
146.4
MONOCYTES_33
146.1
MONOCYTES_34
146.0
MONOCYTES_35
146.0
MONOCYTES_36
145.8
MONOCYTES_37
145.0
MONOCYTES_38
145.0
MONOCYTES_39
144.2
MONOCYTES_40
143.6
MONOCYTES_41
141.8
MONOCYTES_42
139.9
MONOCYTES_43
139.3
MONOCYTES_44
137.9
MONOCYTES_45
136.7
MONOCYTES_46
136.7
MONOCYTES_47
134.2
MONOCYTES_48
133.9
MONOCYTES_49
133.8
MONOCYTES_50
132.4
MONOCYTES_51
132.0
MONOCYTES_52
130.9
MONOCYTES_53
130.3
MONOCYTES_54
129.2
MONOCYTES_55
129.0
MONOCYTES_56
127.7
MONOCYTES_57
125.1
MONOCYTES_58
123.7
MONOCYTES_59
120.8
MONOCYTES_60
120.6
MONOCYTES_61
120.2
MONOCYTES_62
120.2
MONOCYTES_63
120.1
MONOCYTES_64
119.7
MONOCYTES_65
119.5
MONOCYTES_66
119.3
MONOCYTES_67
117.8
MONOCYTES_68
116.1
MONOCYTES_69
115.8
MONOCYTES_70
114.6
MONOCYTES_71
112.7
MONOCYTES_72
111.0
MONOCYTES_73
109.7
MONOCYTES_74
107.0
MONOCYTES_75
106.4
MONOCYTES_76
105.6
MONOCYTES_77
104.7
MONOCYTES_78
104.0
MONOCYTES_79
103.0
MONOCYTES_80
100.2
MONOCYTES_81
97.2
MONOCYTES_82
94.9
MONOCYTES_83
94.8
MONOCYTES_84
93.9
MONOCYTES_85
93.8
MONOCYTES_86
93.7
MONOCYTES_87
90.9
MONOCYTES_88
87.3
MONOCYTES_89
82.3
MONOCYTES_90
81.4
MONOCYTES_91
79.8
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Non-classical monocyte TPM: 148.7
Samples: 90
Max TPM: 224.5
Min TPM: 63.4
M2_1
224.5
M2_2
219.1
M2_3
217.1
M2_4
216.9
M2_5
214.5
M2_6
204.5
M2_7
200.2
M2_8
198.5
M2_9
196.2
M2_10
194.7
M2_11
192.7
M2_12
191.6
M2_13
190.8
M2_14
188.1
M2_15
187.7
M2_16
186.7
M2_17
186.0
M2_18
184.8
M2_19
184.3
M2_20
184.0
M2_21
182.9
M2_22
181.0
M2_23
178.8
M2_24
177.2
M2_25
175.8
M2_26
173.6
M2_27
173.5
M2_28
172.6
M2_29
172.0
M2_30
170.9
M2_31
170.0
M2_32
169.7
M2_33
168.1
M2_34
165.7
M2_35
165.0
M2_36
163.4
M2_37
162.4
M2_38
162.1
M2_39
161.7
M2_40
158.4
M2_41
155.1
M2_42
154.3
M2_43
152.7
M2_44
152.2
M2_45
151.5
M2_46
150.9
M2_47
150.5
M2_48
150.3
M2_49
149.1
M2_50
148.5
M2_51
147.5
M2_52
147.1
M2_53
145.7
M2_54
139.4
M2_55
138.1
M2_56
137.4
M2_57
131.1
M2_58
130.9
M2_59
130.6
M2_60
130.4
M2_61
130.2
M2_62
129.1
M2_63
128.6
M2_64
127.5
M2_65
127.3
M2_66
126.8
M2_67
126.6
M2_68
122.6
M2_69
118.4
M2_70
118.1
M2_71
117.7
M2_72
116.4
M2_73
112.2
M2_74
106.5
M2_75
105.9
M2_76
102.9
M2_77
101.4
M2_78
101.0
M2_79
98.6
M2_80
92.8
M2_81
91.7
M2_82
90.5
M2_83
88.0
M2_84
86.2
M2_85
83.4
M2_86
81.4
M2_87
79.4
M2_88
74.8
M2_89
69.8
M2_90
63.4
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