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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

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  • CELL LINE

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  • EVOLUTION

  • RPS21
EVOLUTIONARY SUBSTANTIA NIGRA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
SUBSTANTIA NIGRA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:317.7 nTPM
GTEx:1399.3 nTPM
FANTOM5:339.1 Scaled Tags Per Million
Macaque:262.2 nTPM
Pig:560.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

317.7
Sample id Sample description nTPM
Substantia nigra
nTPM: 317.7
2409 Female, age 72, unknown 533.7
1851 Male, age 51, unknown 436.4
2241 Male, age 72, unknown 349.3
1916 Female, age 42, unknown 334.4
2699 Male, age 18, unknown 299.3
2665 Male, age 74, both hemispheres 297.8
1889 Female, age 72, unknown 264.7
2590 Female, age 75, unknown 233.9
1941 Male, age 53, unknown 231.1
2583 Male, age 75, right hemisphere 196.6

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1399.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1399.3
Samples: 183

Max nTPM: 4406.6
Min nTPM: 504.3
Std nTPM: 560.8
Median nTPM: 1282.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 4406.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 3643.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3375.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2791.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2700.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 2616.4
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 2568.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 2544.5
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 2412.6
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 2386.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2364.8
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 2355.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 2304.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2232.5
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 2184.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 2171.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 2163.2
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 2147.3
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 2080.7
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 2015.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 1979.0
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 1944.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1939.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 1936.6
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 1932.7
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 1927.5
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 1912.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 1888.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 1864.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 1849.7
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 1816.7
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 1781.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 1773.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1770.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 1760.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1754.9
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 1750.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1737.8
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 1733.7
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 1730.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 1727.0
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 1719.5
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 1703.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1687.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 1685.2
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 1669.4
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 1666.5
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 1659.7
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 1650.7
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 1634.9
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 1632.8
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 1610.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1601.0
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 1567.0
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 1564.8
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 1558.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1550.2
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 1548.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 1547.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1545.5
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 1543.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 1543.0
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 1537.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 1513.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 1511.8
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 1475.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 1474.8
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 1452.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 1448.1
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 1422.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1422.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 1410.8
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 1408.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 1405.3
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 1379.9
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 1375.7
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 1361.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 1352.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 1351.3
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 1348.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 1348.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1341.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 1341.4
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 1336.2
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 1333.9
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 1324.6
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 1319.7
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 1305.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 1303.6
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 1289.1
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 1286.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 1282.0
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 1281.3
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 1274.6
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 1260.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 1257.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 1253.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 1242.7
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 1238.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1229.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 1220.9
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 1219.2
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 1218.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 1217.1
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 1210.6
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 1194.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 1188.9
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 1187.8
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 1177.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 1176.3
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 1173.8
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 1173.7
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 1171.1
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 1169.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 1166.4
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 1155.3
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 1148.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 1130.2
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 1124.3
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 1122.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 1122.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 1121.7
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 1120.0
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 1117.3
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 1115.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 1107.2
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 1104.1
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 1100.3
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 1096.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 1088.5
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 1084.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 1078.2
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 1074.5
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 1074.0
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 1043.2
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 1033.3
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 1032.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 1022.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 1021.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 1010.8
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 998.2
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 991.0
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 981.5
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 974.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 964.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 960.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 953.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 938.5
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 938.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 935.6
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 929.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 918.6
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 917.5
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 899.5
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 878.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 875.2
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 863.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 859.6
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 858.2
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 845.5
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 843.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 839.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 838.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 834.9
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 821.2
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 813.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 812.7
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 812.1
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 793.0
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 789.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 777.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 762.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 747.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 744.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 742.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 714.4
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 708.1
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 704.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 681.9
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 665.4
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 648.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 507.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 504.3
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SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

339.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 339.1
FF:10158-103A5 76 years, female 339.1

SUBSTANTIA NIGRA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

262.2
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 262.2
Samples: 1

Max nTPM: 262.2
Min nTPM: 262.2
Sample A 262.2

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

560.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 560.0
Samples: 3

Max nTPM: 758.1
Min nTPM: 397.2
Sample A Female 758.1
Sample B Female 524.6
Sample C Male 397.2

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