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RPS21
HPA
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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • RPS21
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:917.3 nTPM
FANTOM5:217.5 Scaled Tags Per Million
Pig:335.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA003371
Glial cells Not detected
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

917.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 917.3
Samples: 300

Max nTPM: 2778.7
Min nTPM: 417.4
Std nTPM: 312.8
Median nTPM: 845.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2778.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 2489.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 2235.1
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 2225.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 2069.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1916.6
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1891.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1888.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1797.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1590.2
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1574.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 1549.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1497.8
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 1452.2
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1437.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1427.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1388.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 1370.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1340.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1339.3
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 1322.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1320.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 1295.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1293.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1287.4
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 1279.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1268.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1264.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1259.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1247.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1234.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1228.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1227.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 1222.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1218.0
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 1216.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1204.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 1204.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1195.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1193.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1186.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1182.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1176.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1165.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 1162.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1160.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1158.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 1155.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1133.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1133.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1131.0
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 1129.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1125.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1115.9
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 1113.0
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 1112.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1104.8
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 1104.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 1099.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1097.7
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 1094.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1093.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1087.0
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 1083.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1061.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1060.0
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 1059.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1059.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1051.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1046.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1045.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1043.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 1041.1
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 1035.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 1034.6
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 1032.9
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 1026.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 1022.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1021.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1018.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 1016.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1014.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 1010.0
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 1009.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1007.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 1006.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1005.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 1001.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 999.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 993.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 991.5
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 988.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 979.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 978.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 977.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 975.2
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 972.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 970.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 964.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 963.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 958.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 958.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 955.8
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 953.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 950.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 948.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 941.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 940.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 938.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 938.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 935.0
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 932.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 928.9
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 927.1
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 922.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 916.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 915.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 913.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 908.3
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 907.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 907.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 903.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 902.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 901.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 901.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 900.1
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 900.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 898.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 892.8
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 891.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 886.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 886.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 885.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 882.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 879.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 876.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 873.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 865.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 864.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 863.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 860.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 858.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 857.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 856.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 856.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 854.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 850.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 849.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 849.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 845.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 844.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 844.6
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 843.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 841.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 839.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 836.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 836.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 835.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 835.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 834.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 834.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 831.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 830.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 829.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 828.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 825.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 823.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 823.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 822.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 820.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 814.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 813.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 813.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 811.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 809.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 807.7
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 806.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 806.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 802.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 802.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 801.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 801.5
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 801.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 796.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 794.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 789.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 788.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 788.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 788.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 783.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 782.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 780.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 779.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 776.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 774.7
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 773.5
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 772.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 770.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 769.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 766.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 764.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 764.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 763.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 763.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 762.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 761.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 758.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 751.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 750.4
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 750.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 748.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 747.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 743.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 742.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 742.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 741.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 740.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 740.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 738.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 738.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 737.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 730.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 730.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 725.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 723.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 722.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 720.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 717.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 713.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 713.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 713.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 711.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 710.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 707.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 707.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 707.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 704.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 702.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 702.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 696.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 696.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 696.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 695.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 695.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 695.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 693.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 692.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 691.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 690.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 689.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 687.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 687.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 681.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 677.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 675.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 674.7
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 674.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 671.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 665.3
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 664.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 660.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 660.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 659.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 659.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 658.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 647.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 646.4
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 640.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 636.0
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 628.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 626.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 622.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 618.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 603.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 600.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 598.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 597.0
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 594.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 592.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 588.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 586.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 585.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 583.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 581.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 580.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 569.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 555.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 552.8
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 531.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 523.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 519.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 514.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 496.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 489.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 480.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 476.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 470.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 450.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 442.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 417.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

217.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 217.5
FF:10164-103B2 76 years, female 217.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

335.1
Pig sample Sample description nTPM
Caudate
nTPM: 335.2
Samples: 4

Max nTPM: 357.8
Min nTPM: 298.7
Sample A Female 347.3
Sample B Female 357.8
Sample C Male 336.8
Sample D Male 298.7

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