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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
554.1
Sample id
Sample description
nTPM
Amygdala nTPM: 554.1
1987
Female, age 91, left hemisphere
750.1
2517
Female, age 94, left hemisphere
611.5
2514
Male, age 75, right hemisphere
549.8
2814
Male, age 76, right hemisphere
440.7
2695
Female, age 67, right hemisphere
418.5
Basal amygdala nTPM: 409.3
2609
Male, age 75, right hemisphere
577.2
2110
Male, age 80, left hemisphere
505.1
1955
Male, age 76, both hemispheres
472.9
2243
Female, age 91, right hemisphere
403.5
2685
Female, age 94, left hemisphere
376.7
2827
Female, age 67, right hemisphere
120.3
Central amygdala nTPM: 507.1
2515
Male, age 75, right hemisphere
597.1
2826
Female, age 94, left hemisphere
587.2
2239
Male, age 80, left hemisphere
512.6
1905
Male, age 76, both hemispheres
467.4
2701
Female, age 91, right hemisphere
371.0
Corticomedial amygdala nTPM: 462.6
2242
Female, age 91, right hemisphere
579.0
2428
Male, age 75, right hemisphere
563.6
2829
Male, age 80, left hemisphere
536.9
2240
Male, age 76, both hemispheres
453.4
2429
Female, age 94, left hemisphere
450.8
2535
Female, age 67, right hemisphere
191.8
Lateral amygdala nTPM: 411.7
2516
Male, age 75, right hemisphere
580.0
2256
Male, age 80, left hemisphere
499.2
2534
Female, age 94, left hemisphere
472.1
1883
Male, age 76, both hemispheres
443.3
2255
Female, age 91, right hemisphere
343.5
2830
Female, age 67, right hemisphere
131.8
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
251.4
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 251.4
Samples: 181
Max nTPM: 791.6
Min nTPM: 8.4
Std nTPM: 139.9
Median nTPM: 228.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
791.6
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
711.1
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
597.0
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
581.8
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
573.0
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
559.0
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
538.7
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
532.3
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
519.1
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
507.3
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
500.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
493.2
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
478.9
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
473.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
465.2
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
449.3
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
448.4
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
426.5
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
422.4
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
422.0
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
421.2
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
415.5
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
410.9
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
403.9
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
402.2
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
401.8
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
395.1
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
381.6
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
376.6
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
372.9
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
372.7
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
370.5
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
370.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
368.3
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
365.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
364.9
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
364.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
361.6
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
360.4
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
352.2
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
347.0
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
345.6
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
343.4
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
341.6
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
337.1
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
330.2
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
328.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
328.5
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
328.2
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
326.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
325.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
323.8
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
321.0
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
320.6
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
316.3
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
316.2
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
315.6
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
312.8
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
311.7
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
311.1
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
310.4
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
306.8
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
299.4
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
298.0
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
296.6
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
293.8
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
285.3
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
281.3
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
281.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
278.1
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
277.9
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
269.2
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
267.7
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
265.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
264.6
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
262.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
257.9
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
255.1
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
254.6
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
252.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
250.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
248.1
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
247.4
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
242.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
242.2
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
240.2
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
239.1
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
238.0
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
237.4
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
235.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
228.8
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
228.3
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
225.9
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
223.4
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
222.6
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
222.6
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
221.9
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
221.0
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
219.2
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
218.0
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
212.8
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
210.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
210.5
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
209.9
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
205.2
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
197.0
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
193.1
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
191.8
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
188.5
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
187.2
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
184.4
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
182.8
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
182.4
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
182.3
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
181.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
181.3
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
180.9
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
180.8
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
179.2
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
177.8
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
176.0
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
173.5
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
172.0
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
171.6
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
170.3
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
170.0
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
167.4
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
163.1
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
161.3
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
159.8
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
159.3
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
157.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
156.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
155.8
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
151.1
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
150.2
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
147.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
147.5
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
144.7
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
143.6
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
141.5
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
137.4
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
136.5
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
128.6
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
127.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
124.9
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
121.4
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
121.1
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
120.1
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
117.2
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
114.6
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
113.9
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
113.4
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
112.5
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
112.0
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
108.9
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
106.6
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
104.2
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
103.0
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
100.7
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
99.5
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
97.4
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
93.4
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
88.8
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
85.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
83.6
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
81.6
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
71.8
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
69.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
64.3
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
64.0
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
58.0
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
54.3
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
51.0
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
49.0
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
38.6
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
34.9
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
21.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
19.9
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
12.2
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
8.4
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
473.0
Pig sample
Sample description
nTPM
Amygdala nTPM: 473.0
Samples: 4
Max nTPM: 549.9
Min nTPM: 407.2
Sample A
Female
417.6
Sample B
Female
517.4
Sample C
Male
407.2
Sample D
Male
549.9
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
91.2
Mouse sample
Sample description
nTPM
Amygdala nTPM: 91.2
Samples: 4
Max nTPM: 102.1
Min nTPM: 86.6
Sample A
Male
87.8
Sample B
Male
88.2
Sample C
Female
86.6
Sample D
Female
102.1
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
