MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:173.8 nTPM
HPA Brain:727.2 nTPM
GTEx:173.8 nTPM
FANTOM5:721.6 Scaled Tags Per Million
Pig:975.3 nTPM
Mouse:219.3 nTPM
Allen mouse:4.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 727.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 396.1
2828 Female, age 72, unknown 620.7
2586 Male, age 75, left hemisphere 532.0
1870 Female, age 42, unknown 449.0
2411 Female, age 72, unknown 419.9
1827 Male, age 72, unknown 415.8
1833 Male, age 53, unknown 384.5
1830 Male, age 51, unknown 343.9
2666 Male, age 74, left hemisphere 276.5
2019 Male, age 18, unknown 260.7
2219 Male, age 76, both hemispheres 257.8
Dorsal raphe nucleus
nTPM: 662.3
2298 Female, age 72, unknown 922.3
2016 Female, age 72, unknown 815.4
1828 Male, age 53, unknown 613.8
2047 Male, age 72, unknown 586.6
2750 Male, age 76, both hemispheres 373.7
Inferior colliculus
nTPM: 551.8
2097 Female, age 72, unknown 767.6
1848 Female, age 42, unknown 553.1
1890 Male, age 53, unknown 472.4
2849 Male, age 72, unknown 414.0
Median raphe nucleus
nTPM: 396.3
2220 Male, age 76, midline 396.3
Periaquaductal grey, anterior
nTPM: 541.2
1795 Male, age 51, unknown 584.1
1947 Male, age 18, unknown 555.1
2502 Female, age 75, unknown 484.3
Periaquaductal grey, dorsal
nTPM: 609.9
1840 Male, age 53, unknown 696.8
2850 Male, age 76, both hemispheres 605.4
2464 Female, age 72, unknown 597.6
1831 Male, age 72, unknown 539.6
Periaquaductal grey, lateral
nTPM: 727.2
2053 Male, age 18, unknown 877.9
2272 Male, age 74, both hemispheres 681.2
2140 Male, age 76, both hemispheres 622.6
Pretectal area
nTPM: 541.8
2273 Male, age 74, both hemispheres 971.9
2224 Female, age 72, unknown 754.8
2825 Male, age 18, unknown 607.7
2667 Female, age 75, unknown 597.5
1944 Female, age 72, unknown 529.3
2316 Male, age 76, right hemisphere 506.6
1815 Male, age 53, unknown 448.0
1817 Female, age 42, unknown 447.0
1816 Male, age 51, unknown 430.8
2407 Male, age 75, both hemispheres 365.0
2007 Male, age 72, unknown 300.7
Red nucleus
nTPM: 436.7
2725 Female, age 75, unknown 568.0
2503 Female, age 72, unknown 550.6
1821 Female, age 72, unknown 543.1
2227 Male, age 72, unknown 506.4
2769 Male, age 72, unknown 502.5
1954 Female, age 42, unknown 493.4
1904 Male, age 53, unknown 460.3
2823 Male, age 76, right hemisphere 434.0
1865 Male, age 51, unknown 416.9
2584 Male, age 75, left hemisphere 260.6
2785 Male, age 18, unknown 254.8
2588 Male, age 74, left hemisphere 249.8
Substantia nigra
nTPM: 480.9
2699 Male, age 18, unknown 715.9
1916 Female, age 42, unknown 611.2
2241 Male, age 72, unknown 547.2
1851 Male, age 51, unknown 541.6
2409 Female, age 72, unknown 512.6
1889 Female, age 72, unknown 478.7
1941 Male, age 53, unknown 426.4
2590 Female, age 75, unknown 379.0
2583 Male, age 75, right hemisphere 348.3
2665 Male, age 74, both hemispheres 248.2
Superior colliculus
nTPM: 496.5
1995 Male, age 72, unknown 699.9
1913 Female, age 42, unknown 610.8
1796 Male, age 53, unknown 530.9
2087 Female, age 72, unknown 514.9
2261 Male, age 18, unknown 508.5
2587 Male, age 74, left hemisphere 466.3
1839 Male, age 51, unknown 450.5
2664 Male, age 75, both hemispheres 446.5
2668 Female, age 75, unknown 420.5
1895 Male, age 76, right hemisphere 316.2
Ventral tegmental area
nTPM: 523.3
1942 Male, age 51, unknown 587.7
1915 Female, age 42, unknown 581.0
2410 Female, age 72, unknown 557.1
2021 Male, age 53, unknown 545.2
2223 Female, age 72, unknown 441.2
2218 Male, age 76, both hemispheres 427.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 173.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 173.8
Samples: 183

Max nTPM: 652.3
Min nTPM: 10.7
Std nTPM: 115.2
Median nTPM: 155.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 652.3
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 645.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 543.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 539.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 520.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 506.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 459.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 428.3
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 423.7
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 420.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 354.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 721.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 721.6
FF:10158-103A5 76 years, female 721.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 975.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 925.2
Samples: 4

Max nTPM: 1000.6
Min nTPM: 789.3
Sample A Female 936.4
Sample B Female 789.3
Sample C Male 974.3
Sample D Male 1000.6
Midbrain
nTPM: 975.3
Samples: 4

Max nTPM: 1769.9
Min nTPM: 563.1
Sample A Female 1769.9
Sample B Female 802.4
Sample C Male 765.7
Sample D Male 563.1
Periaqueductal gray
nTPM: 961.1
Samples: 3

Max nTPM: 1086.2
Min nTPM: 860.0
Sample B Female 860.0
Sample C Male 1086.2
Sample D Male 937.2
Superior colliculi
nTPM: 570.4
Samples: 4

Max nTPM: 716.5
Min nTPM: 303.7
Sample A Female 546.8
Sample B Female 303.7
Sample C Male 716.5
Sample D Male 714.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 219.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 219.3
Samples: 4

Max nTPM: 222.5
Min nTPM: 213.9
Sample A Male 219.4
Sample B Male 221.2
Sample C Female 213.9
Sample D Female 222.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.9
77454660 Antisense, RP_070129_01_C02, Mouse strain C57BL/6J (56 days, male) 5.8
79556722 Antisense, RP_071204_01_E02, Mouse strain C57BL/6J (56 days, male) 5.7
108 Antisense, RP_040324_01_F07, Mouse strain C57BL/6J (56 days, male) 3.3
109 Antisense, RP_040324_01_F07, Mouse strain C57BL/6J (56 days, male) 2.6

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