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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
248.5
Sample id
Sample description
nTPM
Amygdala nTPM: 169.9
2814
Male, age 76, right hemisphere
365.6
1987
Female, age 91, left hemisphere
185.4
2517
Female, age 94, left hemisphere
143.9
2514
Male, age 75, right hemisphere
80.9
2695
Female, age 67, right hemisphere
74.0
Basal amygdala nTPM: 213.0
2243
Female, age 91, right hemisphere
296.9
1955
Male, age 76, both hemispheres
269.7
2685
Female, age 94, left hemisphere
248.8
2110
Male, age 80, left hemisphere
212.5
2827
Female, age 67, right hemisphere
160.7
2609
Male, age 75, right hemisphere
89.1
Central amygdala nTPM: 248.5
2826
Female, age 94, left hemisphere
352.7
1905
Male, age 76, both hemispheres
275.4
2701
Female, age 91, right hemisphere
251.3
2239
Male, age 80, left hemisphere
235.3
2515
Male, age 75, right hemisphere
127.9
Corticomedial amygdala nTPM: 203.6
2242
Female, age 91, right hemisphere
263.4
2829
Male, age 80, left hemisphere
246.8
2240
Male, age 76, both hemispheres
246.3
2429
Female, age 94, left hemisphere
204.4
2535
Female, age 67, right hemisphere
171.4
2428
Male, age 75, right hemisphere
89.6
Lateral amygdala nTPM: 216.0
2534
Female, age 94, left hemisphere
421.3
1883
Male, age 76, both hemispheres
285.4
2256
Male, age 80, left hemisphere
220.2
2255
Female, age 91, right hemisphere
210.1
2830
Female, age 67, right hemisphere
89.2
2516
Male, age 75, right hemisphere
69.9
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
275.0
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 275.0
Samples: 181
Max nTPM: 1624.6
Min nTPM: 33.8
Std nTPM: 198.5
Median nTPM: 229.5
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
1624.6
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
890.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
830.3
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
745.8
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
728.0
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
723.6
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
719.5
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
662.9
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
641.7
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
635.4
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
631.3
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
610.3
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
584.0
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
581.8
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
576.9
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
527.0
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
526.9
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
526.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
522.9
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
502.1
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
500.2
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
483.7
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
469.9
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
467.9
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
446.4
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
443.4
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
438.4
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
429.1
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
428.5
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
417.7
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
417.5
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
416.5
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
415.6
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
406.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
401.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
397.0
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
394.4
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
390.4
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
389.7
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
385.2
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
374.5
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
372.9
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
364.9
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
364.5
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
363.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
360.7
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
354.1
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
352.3
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
348.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
338.8
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
338.5
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
332.1
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
330.7
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
329.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
326.9
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
322.6
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
321.0
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
317.7
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
311.8
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
309.7
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
308.7
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
306.6
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
304.1
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
301.4
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
300.8
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
297.8
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
296.9
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
293.1
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
291.7
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
287.5
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
286.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
283.4
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
279.8
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
279.4
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
276.6
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
274.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
273.7
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
266.9
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
265.4
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
254.3
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
252.4
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
250.2
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
241.7
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
239.0
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
238.3
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
234.7
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
232.8
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
232.3
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
231.2
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
230.5
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
229.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
227.3
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
225.1
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
219.4
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
217.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
215.9
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
211.2
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
209.4
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
207.1
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
205.0
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
202.5
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
200.2
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
198.8
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
198.6
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
197.8
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
197.3
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
195.4
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
191.1
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
188.5
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
185.8
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
185.2
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
184.5
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
178.3
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
177.6
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
176.2
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
175.2
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
174.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
171.6
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
165.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
162.8
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
161.8
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
161.0
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
159.3
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
155.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
154.6
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
154.5
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
152.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
152.0
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
151.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
148.6
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
148.3
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
144.8
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
142.5
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
140.4
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
139.8
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
139.8
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
138.7
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
138.6
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
133.2
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
129.9
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
129.4
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
129.1
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
127.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
123.1
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
115.8
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
115.5
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
114.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
113.3
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
112.1
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
110.6
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
110.1
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
108.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
107.5
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
104.3
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
102.7
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
102.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
101.3
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
97.4
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
94.6
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
94.1
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
91.6
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
91.4
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
89.3
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
83.6
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
79.4
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
79.3
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
78.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
77.3
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
75.6
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
75.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
75.2
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
72.0
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
69.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
68.8
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
58.6
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
56.5
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
55.4
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
54.2
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
44.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
43.7
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
33.8
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
336.4
Pig sample
Sample description
nTPM
Amygdala nTPM: 336.4
Samples: 4
Max nTPM: 486.8
Min nTPM: 251.5
Sample A
Female
486.8
Sample B
Female
251.5
Sample C
Male
326.1
Sample D
Male
281.3
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
525.9
Mouse sample
Sample description
nTPM
Amygdala nTPM: 525.9
Samples: 4
Max nTPM: 598.8
Min nTPM: 427.7
Sample A
Male
598.8
Sample B
Male
546.2
Sample C
Female
427.7
Sample D
Female
531.0
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
