MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:84.6 nTPM
HPA Brain:186.8 nTPM
GTEx:84.6 nTPM
FANTOM5:95.6 Scaled Tags Per Million
Pig:278.5 nTPM
Mouse:269.0 nTPM
Allen mouse:12.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 186.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 91.4
2219 Male, age 76, both hemispheres 157.6
2019 Male, age 18, unknown 126.7
2411 Female, age 72, unknown 122.9
1833 Male, age 53, unknown 95.0
1830 Male, age 51, unknown 74.9
1827 Male, age 72, unknown 73.1
1870 Female, age 42, unknown 70.5
2666 Male, age 74, left hemisphere 66.1
2828 Female, age 72, unknown 64.5
2586 Male, age 75, left hemisphere 63.2
Dorsal raphe nucleus
nTPM: 106.2
2750 Male, age 76, both hemispheres 137.2
2298 Female, age 72, unknown 131.8
2047 Male, age 72, unknown 123.1
1828 Male, age 53, unknown 82.1
2016 Female, age 72, unknown 56.9
Inferior colliculus
nTPM: 82.9
2097 Female, age 72, unknown 110.9
1890 Male, age 53, unknown 86.6
1848 Female, age 42, unknown 72.3
2849 Male, age 72, unknown 61.8
Median raphe nucleus
nTPM: 167.4
2220 Male, age 76, midline 167.4
Periaquaductal grey, anterior
nTPM: 69.1
2502 Female, age 75, unknown 74.5
1795 Male, age 51, unknown 71.0
1947 Male, age 18, unknown 61.7
Periaquaductal grey, dorsal
nTPM: 69.4
1831 Male, age 72, unknown 77.3
2464 Female, age 72, unknown 72.7
1840 Male, age 53, unknown 64.9
2850 Male, age 76, both hemispheres 62.9
Periaquaductal grey, lateral
nTPM: 53.1
2272 Male, age 74, both hemispheres 59.1
2053 Male, age 18, unknown 58.8
2140 Male, age 76, both hemispheres 41.5
Pretectal area
nTPM: 119.1
1944 Female, age 72, unknown 204.9
1817 Female, age 42, unknown 197.4
2007 Male, age 72, unknown 172.7
1815 Male, age 53, unknown 172.6
1816 Male, age 51, unknown 168.5
2667 Female, age 75, unknown 107.7
2224 Female, age 72, unknown 70.3
2316 Male, age 76, right hemisphere 59.1
2273 Male, age 74, both hemispheres 55.8
2407 Male, age 75, both hemispheres 52.6
2825 Male, age 18, unknown 48.9
Red nucleus
nTPM: 81.2
2785 Male, age 18, unknown 116.7
1821 Female, age 72, unknown 113.2
2584 Male, age 75, left hemisphere 89.7
1904 Male, age 53, unknown 83.2
2588 Male, age 74, left hemisphere 80.2
1954 Female, age 42, unknown 79.0
2725 Female, age 75, unknown 72.0
1865 Male, age 51, unknown 71.7
2503 Female, age 72, unknown 70.4
2823 Male, age 76, right hemisphere 70.2
2227 Male, age 72, unknown 64.6
2769 Male, age 72, unknown 63.6
Substantia nigra
nTPM: 186.8
1916 Female, age 42, unknown 254.5
2409 Female, age 72, unknown 233.2
2241 Male, age 72, unknown 228.5
1851 Male, age 51, unknown 217.1
1941 Male, age 53, unknown 204.6
1889 Female, age 72, unknown 203.1
2665 Male, age 74, both hemispheres 185.5
2699 Male, age 18, unknown 158.5
2583 Male, age 75, right hemisphere 96.6
2590 Female, age 75, unknown 86.2
Superior colliculus
nTPM: 93.0
2668 Female, age 75, unknown 171.2
2087 Female, age 72, unknown 161.1
2261 Male, age 18, unknown 93.1
1796 Male, age 53, unknown 90.1
1895 Male, age 76, right hemisphere 83.0
2587 Male, age 74, left hemisphere 80.6
1913 Female, age 42, unknown 80.0
1995 Male, age 72, unknown 69.0
1839 Male, age 51, unknown 64.4
2664 Male, age 75, both hemispheres 37.8
Ventral tegmental area
nTPM: 152.6
2410 Female, age 72, unknown 247.9
2218 Male, age 76, both hemispheres 220.5
1915 Female, age 42, unknown 177.1
1942 Male, age 51, unknown 112.9
2223 Female, age 72, unknown 85.5
2021 Male, age 53, unknown 71.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 84.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 84.6
Samples: 183

Max nTPM: 399.9
Min nTPM: 12.3
Std nTPM: 72.8
Median nTPM: 54.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 399.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 396.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 361.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 315.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 291.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 284.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 282.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 276.6
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 253.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 230.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 221.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 95.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 95.6
FF:10158-103A5 76 years, female 95.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 278.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 278.5
Samples: 4

Max nTPM: 402.5
Min nTPM: 165.5
Sample A Female 350.2
Sample B Female 165.5
Sample C Male 402.5
Sample D Male 195.6
Midbrain
nTPM: 236.7
Samples: 4

Max nTPM: 298.3
Min nTPM: 179.2
Sample A Female 298.3
Sample B Female 217.8
Sample C Male 251.3
Sample D Male 179.2
Periaqueductal gray
nTPM: 162.9
Samples: 3

Max nTPM: 214.3
Min nTPM: 130.8
Sample B Female 143.6
Sample C Male 214.3
Sample D Male 130.8
Superior colliculi
nTPM: 221.5
Samples: 4

Max nTPM: 306.3
Min nTPM: 105.4
Sample A Female 244.1
Sample B Female 105.4
Sample C Male 306.3
Sample D Male 230.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 269.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 269.0
Samples: 4

Max nTPM: 282.3
Min nTPM: 249.7
Sample A Male 249.7
Sample B Male 268.9
Sample C Female 282.3
Sample D Female 275.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 12.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.8
68798370 Antisense, RP_050215_02_C11, Mouse strain C57BL/6J (56 days, male) 13.0
71064278 Antisense, RP_050725_03_D11, Mouse strain C57BL/6J (56 days, male) 12.5

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