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  • RCAN2
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:38.5 nTPM
HPA Brain:73.0 nTPM
GTEx:38.5 nTPM
FANTOM5:82.0 Scaled Tags Per Million
Pig:277.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 69.8
2194 Female, age 79, both hemispheres 93.0
1981 Female, age 72, midline 77.7
2048 Male, age 55, midline 71.7
2816 Male, age 47, midline 64.2
2565 Male, age 75, midline 42.6
Cervical spinal cord, dorsal horn
nTPM: 69.2
2173 Female, age 72, unknown 102.4
2296 Male, age 66, both hemispheres 84.3
2297 Male, age 75, both hemispheres 67.1
2069 Male, age 47, both hemispheres 63.7
2721 Male, age 90, both hemispheres 50.4
1877 Male, age 55, unknown 47.4
Cervical spinal cord, ventral horn
nTPM: 73.0
2820 Female, age 79, both hemispheres 105.0
2068 Male, age 55, unknown 103.3
2480 Male, age 75, both hemispheres 69.9
2295 Male, age 66, both hemispheres 55.4
2098 Female, age 72, unknown 54.1
2809 Male, age 90, both hemispheres 50.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

38.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 38.5
Samples: 204

Max nTPM: 124.1
Min nTPM: 15.9
Std nTPM: 12.2
Median nTPM: 37.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 124.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 78.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 72.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 68.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 65.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 65.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 63.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 63.0
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 62.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 57.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 57.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 56.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 56.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 56.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 55.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 55.0
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 54.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 53.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 53.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 52.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 52.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 51.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 50.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 50.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 50.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 49.6
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 49.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 48.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 48.8
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 48.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 48.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 48.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 47.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 47.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 47.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 46.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 46.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 46.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 46.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 46.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 46.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 46.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 45.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 45.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 45.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 45.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 44.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 44.8
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 44.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 44.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 44.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 44.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 44.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 44.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 44.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 44.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 43.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 43.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 42.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 42.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 42.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 42.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 42.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 42.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 42.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 41.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 41.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 41.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 41.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 41.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 40.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 40.9
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 40.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 40.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 40.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 40.2
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 40.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 40.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 39.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 39.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 39.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 39.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 39.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 39.4
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 39.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 39.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 38.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 38.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 38.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 38.8
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 38.8
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 38.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 38.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 38.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 38.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 38.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 38.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 37.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 37.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 37.7
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 37.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 37.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 37.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 37.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 36.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 36.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 36.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 36.4
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 36.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 36.2
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 36.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 36.0
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 36.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 35.9
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 35.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 35.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 35.5
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 35.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 35.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 35.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 35.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 35.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 34.9
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 34.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 34.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 34.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 34.6
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 34.5
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 34.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 33.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 33.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 33.6
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 33.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 33.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 33.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 33.5
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 33.4
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 33.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 33.2
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 33.0
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 32.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 32.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 32.4
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 32.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 31.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 31.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 31.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 30.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 30.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 30.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 30.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 30.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 30.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 30.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 30.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 30.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 30.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 30.1
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 30.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 30.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 29.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 29.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 29.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 29.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 29.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 29.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 29.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 29.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 28.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 28.9
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 28.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 28.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 28.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 28.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 27.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 27.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 27.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 27.3
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 27.3
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 26.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 25.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 25.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 25.3
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 24.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 24.8
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 24.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 24.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 24.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 24.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 24.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 24.1
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 23.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 22.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 21.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 21.1
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 20.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 20.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 20.3
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 20.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 19.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 17.6
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 17.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 16.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 15.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

82.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 82.0
FF:10181-103D1 60 years, female 113.9
FF:10159-103A6 76 years, female 50.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

277.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 206.1
Samples: 4

Max nTPM: 248.7
Min nTPM: 174.3
Sample A Female 209.1
Sample B Female 192.3
Sample C Male 174.3
Sample D Male 248.7
Ventral spinal cord
nTPM: 277.2
Samples: 4

Max nTPM: 323.5
Min nTPM: 259.1
Sample A Female 264.0
Sample B Female 259.1
Sample C Male 262.2
Sample D Male 323.5

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