A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.1
nTPM
Monaco:
17.4
nTPM
Schmiedel:
31.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.1
HPA sample
nTPM
Classical monocyte nTPM: 1.3
Samples: 6
Max nTPM: 1.8
Min nTPM: 0.8
P10809_1003
0.8
P10809_1020
1.0
P10809_1039
1.8
P10809_1058
1.1
P10809_1080
1.2
P10809_1107
1.6
Intermediate monocyte nTPM: 1.4
Samples: 6
Max nTPM: 1.8
Min nTPM: 1.1
P10809_1004
1.2
P10809_1023
1.1
P10809_1042
1.7
P10809_1061
1.8
P10809_1081
1.2
P10809_1108
1.2
Non-classical monocyte nTPM: 2.1
Samples: 5
Max nTPM: 6.9
Min nTPM: 0.6
P10809_1005
0.6
P10809_1053
0.7
P10809_1072
6.9
P10809_1082
1.0
P10809_1109
1.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.4
Monaco sample
nTPM
Classical monocyte nTPM: 14.1
Samples: 4
Max nTPM: 19.3
Min nTPM: 9.3
RHH5313_R3680
9.3
RHH5221_R3593
14.6
RHH5250_R3622
13.1
RHH5279_R3651
19.3
Intermediate monocyte nTPM: 17.4
Samples: 4
Max nTPM: 19.6
Min nTPM: 12.6
RHH5314_R3681
12.6
RHH5222_R3594
18.5
RHH5251_R3623
19.6
RHH5280_R3652
18.8
Non-classical monocyte nTPM: 14.3
Samples: 4
Max nTPM: 18.0
Min nTPM: 9.2
RHH5315_R3682
9.2
RHH5223_R3595
17.4
RHH5252_R3624
18.0
RHH5281_R3653
12.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.9
Schmiedel sample id
TPM
Classical monocyte TPM: 28.5
Samples: 91
Max TPM: 41.2
Min TPM: 16.5
MONOCYTES_1
41.2
MONOCYTES_2
39.5
MONOCYTES_3
38.2
MONOCYTES_4
37.6
MONOCYTES_5
37.4
MONOCYTES_6
37.3
MONOCYTES_7
37.2
MONOCYTES_8
36.3
MONOCYTES_9
35.9
MONOCYTES_10
35.6
MONOCYTES_11
35.3
MONOCYTES_12
35.3
MONOCYTES_13
35.2
MONOCYTES_14
34.5
MONOCYTES_15
33.5
MONOCYTES_16
33.1
MONOCYTES_17
32.7
MONOCYTES_18
32.2
MONOCYTES_19
32.1
MONOCYTES_20
31.9
MONOCYTES_21
31.7
MONOCYTES_22
31.6
MONOCYTES_23
31.6
MONOCYTES_24
31.4
MONOCYTES_25
31.4
MONOCYTES_26
31.3
MONOCYTES_27
31.2
MONOCYTES_28
31.1
MONOCYTES_29
30.7
MONOCYTES_30
30.5
MONOCYTES_31
30.4
MONOCYTES_32
30.4
MONOCYTES_33
30.4
MONOCYTES_34
30.3
MONOCYTES_35
30.0
MONOCYTES_36
29.8
MONOCYTES_37
29.6
MONOCYTES_38
29.5
MONOCYTES_39
29.5
MONOCYTES_40
29.3
MONOCYTES_41
29.2
MONOCYTES_42
29.2
MONOCYTES_43
29.1
MONOCYTES_44
28.8
MONOCYTES_45
28.8
MONOCYTES_46
28.7
MONOCYTES_47
28.7
MONOCYTES_48
28.7
MONOCYTES_49
28.7
MONOCYTES_50
28.2
MONOCYTES_51
28.2
MONOCYTES_52
27.8
MONOCYTES_53
27.4
MONOCYTES_54
27.2
MONOCYTES_55
27.2
MONOCYTES_56
27.2
MONOCYTES_57
26.6
MONOCYTES_58
26.6
MONOCYTES_59
26.4
MONOCYTES_60
26.4
MONOCYTES_61
26.3
MONOCYTES_62
26.2
MONOCYTES_63
26.1
MONOCYTES_64
25.8
MONOCYTES_65
25.6
MONOCYTES_66
25.4
MONOCYTES_67
25.3
MONOCYTES_68
25.1
MONOCYTES_69
25.1
MONOCYTES_70
24.9
MONOCYTES_71
24.9
MONOCYTES_72
24.6
MONOCYTES_73
24.5
MONOCYTES_74
24.2
MONOCYTES_75
24.0
MONOCYTES_76
23.9
MONOCYTES_77
23.8
MONOCYTES_78
23.8
MONOCYTES_79
23.4
MONOCYTES_80
22.6
MONOCYTES_81
21.6
MONOCYTES_82
21.2
MONOCYTES_83
20.8
MONOCYTES_84
20.3
MONOCYTES_85
19.8
MONOCYTES_86
19.2
MONOCYTES_87
19.1
MONOCYTES_88
18.5
MONOCYTES_89
17.4
MONOCYTES_90
17.3
MONOCYTES_91
16.5
Show allShow less
Non-classical monocyte TPM: 31.9
Samples: 90
Max TPM: 44.8
Min TPM: 16.4
M2_1
44.8
M2_2
44.0
M2_3
43.7
M2_4
43.6
M2_5
41.6
M2_6
41.5
M2_7
41.2
M2_8
40.5
M2_9
40.4
M2_10
40.4
M2_11
39.7
M2_12
39.6
M2_13
39.5
M2_14
39.5
M2_15
39.0
M2_16
38.9
M2_17
38.6
M2_18
38.5
M2_19
37.9
M2_20
37.9
M2_21
37.6
M2_22
36.9
M2_23
36.9
M2_24
36.9
M2_25
36.7
M2_26
36.6
M2_27
36.2
M2_28
36.1
M2_29
35.6
M2_30
35.4
M2_31
35.4
M2_32
35.4
M2_33
35.0
M2_34
34.9
M2_35
34.3
M2_36
34.3
M2_37
33.7
M2_38
33.7
M2_39
33.5
M2_40
33.4
M2_41
33.3
M2_42
32.7
M2_43
32.7
M2_44
32.5
M2_45
32.5
M2_46
32.4
M2_47
32.3
M2_48
31.8
M2_49
31.7
M2_50
31.7
M2_51
31.5
M2_52
31.2
M2_53
31.2
M2_54
31.1
M2_55
31.0
M2_56
30.9
M2_57
30.7
M2_58
30.2
M2_59
30.1
M2_60
30.0
M2_61
29.4
M2_62
29.0
M2_63
28.9
M2_64
28.9
M2_65
28.8
M2_66
27.6
M2_67
27.2
M2_68
27.2
M2_69
26.5
M2_70
26.4
M2_71
26.1
M2_72
25.4
M2_73
25.0
M2_74
24.2
M2_75
24.1
M2_76
23.9
M2_77
23.7
M2_78
23.5
M2_79
23.2
M2_80
23.0
M2_81
22.8
M2_82
22.6
M2_83
22.1
M2_84
21.8
M2_85
20.8
M2_86
20.0
M2_87
19.1
M2_88
18.6
M2_89
16.8
M2_90
16.4
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
