A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.6
nTPM
Monaco:
11.9
nTPM
Schmiedel:
162.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.6
HPA sample
nTPM
NK-cell nTPM: 0.5
Samples: 6
Max nTPM: 1.2
Min nTPM: 0.1
P10809_1013
0.7
P10809_1033
0.7
P10809_1052
0.1
P10809_1071
0.5
P10809_1093
0.1
P10809_1103
1.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.9
Monaco sample
nTPM
NK-cell nTPM: 11.9
Samples: 4
Max nTPM: 14.9
Min nTPM: 6.8
RHH5316_R3683
12.0
RHH5224_R3596
6.8
RHH5253_R3625
13.9
RHH5282_R3654
14.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
162.2
Schmiedel sample id
TPM
NK-cell TPM: 162.2
Samples: 90
Max TPM: 267.3
Min TPM: 105.7
NK_1
267.3
NK_2
235.1
NK_3
233.1
NK_4
232.2
NK_5
227.8
NK_6
218.3
NK_7
213.7
NK_8
211.9
NK_9
211.6
NK_10
207.3
NK_11
207.0
NK_12
206.4
NK_13
201.3
NK_14
200.4
NK_15
198.9
NK_16
195.5
NK_17
191.6
NK_18
184.6
NK_19
184.3
NK_20
184.2
NK_21
183.7
NK_22
182.8
NK_23
182.5
NK_24
181.6
NK_25
180.1
NK_26
176.9
NK_27
176.9
NK_28
176.5
NK_29
174.9
NK_30
174.6
NK_31
173.9
NK_32
171.6
NK_33
169.2
NK_34
167.6
NK_35
165.9
NK_36
165.7
NK_37
165.3
NK_38
164.7
NK_39
164.6
NK_40
164.3
NK_41
164.0
NK_42
163.6
NK_43
163.3
NK_44
163.0
NK_45
162.9
NK_46
159.1
NK_47
156.5
NK_48
155.5
NK_49
155.0
NK_50
152.9
NK_51
152.6
NK_52
152.1
NK_53
151.2
NK_54
151.1
NK_55
150.1
NK_56
148.8
NK_57
147.7
NK_58
143.3
NK_59
143.2
NK_60
142.8
NK_61
141.0
NK_62
140.8
NK_63
140.3
NK_64
140.2
NK_65
139.2
NK_66
138.6
NK_67
136.6
NK_68
136.0
NK_69
135.9
NK_70
134.9
NK_71
131.6
NK_72
130.6
NK_73
130.1
NK_74
130.0
NK_75
129.6
NK_76
128.6
NK_77
128.4
NK_78
128.1
NK_79
127.8
NK_80
125.3
NK_81
123.5
NK_82
123.0
NK_83
122.9
NK_84
122.7
NK_85
116.7
NK_86
116.5
NK_87
114.0
NK_88
113.2
NK_89
113.1
NK_90
105.7
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