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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • EVOLUTION

  • RAD9A
EVOLUTIONARY SUBSTANTIA NIGRA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
SUBSTANTIA NIGRA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:6.7 nTPM
GTEx:2.9 nTPM
FANTOM5:5.0 Scaled Tags Per Million
Macaque:7.3 nTPM
Pig:7.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

6.7
Sample id Sample description nTPM
Substantia nigra
nTPM: 6.7
2409 Female, age 72, unknown 8.5
2590 Female, age 75, unknown 7.9
1851 Male, age 51, unknown 7.2
2699 Male, age 18, unknown 6.9
2241 Male, age 72, unknown 6.8
1916 Female, age 42, unknown 6.6
1889 Female, age 72, unknown 6.2
2583 Male, age 75, right hemisphere 5.9
1941 Male, age 53, unknown 5.7
2665 Male, age 74, both hemispheres 5.7

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.9
Samples: 183

Max nTPM: 6.0
Min nTPM: 0.5
Std nTPM: 1.0
Median nTPM: 2.7
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 6.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 5.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 5.4
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 5.4
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 5.2
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 5.1
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 5.1
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 5.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 5.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 4.8
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 4.8
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 4.7
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 4.6
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 4.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 4.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 4.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 4.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 4.3
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 4.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 4.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 4.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 4.1
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 4.0
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 4.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 4.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 3.9
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 3.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 3.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 3.9
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 3.9
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 3.8
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 3.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 3.8
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 3.7
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 3.7
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 3.7
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 3.7
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 3.7
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 3.6
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 3.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 3.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 3.6
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 3.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 3.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 3.4
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 3.4
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 3.4
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 3.4
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 3.3
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 3.3
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 3.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 3.3
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 3.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 3.2
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 3.2
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 3.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 3.2
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 3.2
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 3.1
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 3.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 3.1
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 3.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 3.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 3.1
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 3.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 3.1
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 3.1
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 3.0
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 3.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 3.0
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 3.0
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 3.0
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 3.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 2.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 2.9
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 2.9
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 2.9
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 2.9
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 2.9
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 2.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 2.9
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 2.8
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 2.8
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 2.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 2.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 2.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 2.8
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 2.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 2.7
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 2.7
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 2.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 2.7
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 2.7
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 2.7
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 2.6
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 2.6
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 2.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 2.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 2.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 2.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 2.6
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 2.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2.6
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 2.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 2.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2.5
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 2.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 2.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 2.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 2.5
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 2.5
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 2.5
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 2.5
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 2.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 2.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 2.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 2.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 2.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 2.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 2.4
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 2.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 2.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 2.4
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 2.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 2.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 2.3
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 2.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 2.3
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 2.3
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 2.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 2.2
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 2.2
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 2.2
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 2.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 2.2
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 2.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 2.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 2.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 2.1
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 2.1
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 2.1
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 2.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 2.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 2.0
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 2.0
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 2.0
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 2.0
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 2.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 1.9
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 1.9
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 1.9
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 1.9
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 1.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 1.9
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 1.8
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 1.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1.8
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 1.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1.8
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 1.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 1.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 1.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 1.7
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 1.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 1.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 1.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 1.6
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 1.6
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 1.5
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 1.5
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 1.5
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 1.5
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 1.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1.5
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 1.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 1.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 1.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 1.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1.0
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 0.8
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 0.5
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SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

5.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 5.0
FF:10158-103A5 76 years, female 5.0

SUBSTANTIA NIGRA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7.3
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 7.3
Samples: 1

Max nTPM: 7.3
Min nTPM: 7.3
Sample A 7.3

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.3
Samples: 3

Max nTPM: 8.3
Min nTPM: 6.7
Sample A Female 8.3
Sample B Female 6.7
Sample C Male 6.8

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