A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.1
nTPM
Monaco:
11.9
nTPM
Schmiedel:
37.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.1
HPA sample
nTPM
NK-cell nTPM: 3.1
Samples: 6
Max nTPM: 5.8
Min nTPM: 0.0
P10809_1013
2.0
P10809_1033
1.4
P10809_1052
5.8
P10809_1071
5.6
P10809_1093
0.0
P10809_1103
3.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.9
Monaco sample
nTPM
NK-cell nTPM: 11.9
Samples: 4
Max nTPM: 13.6
Min nTPM: 10.0
RHH5316_R3683
10.6
RHH5224_R3596
13.5
RHH5253_R3625
13.6
RHH5282_R3654
10.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.8
Schmiedel sample id
TPM
NK-cell TPM: 37.8
Samples: 90
Max TPM: 57.2
Min TPM: 14.9
NK_1
57.2
NK_2
57.2
NK_3
57.1
NK_4
56.7
NK_5
56.4
NK_6
55.0
NK_7
54.5
NK_8
53.2
NK_9
53.1
NK_10
52.2
NK_11
51.5
NK_12
50.4
NK_13
49.7
NK_14
49.7
NK_15
49.5
NK_16
49.4
NK_17
48.3
NK_18
47.5
NK_19
45.8
NK_20
45.7
NK_21
45.6
NK_22
45.2
NK_23
44.9
NK_24
44.8
NK_25
44.8
NK_26
44.3
NK_27
43.2
NK_28
43.2
NK_29
43.0
NK_30
42.8
NK_31
42.1
NK_32
42.0
NK_33
41.8
NK_34
41.7
NK_35
41.3
NK_36
40.8
NK_37
40.7
NK_38
40.5
NK_39
40.2
NK_40
39.9
NK_41
39.3
NK_42
39.2
NK_43
38.9
NK_44
38.5
NK_45
38.2
NK_46
38.0
NK_47
37.6
NK_48
36.9
NK_49
36.2
NK_50
36.0
NK_51
35.8
NK_52
35.4
NK_53
35.3
NK_54
35.3
NK_55
35.1
NK_56
35.0
NK_57
35.0
NK_58
34.8
NK_59
34.1
NK_60
34.0
NK_61
33.9
NK_62
31.5
NK_63
31.1
NK_64
30.7
NK_65
30.7
NK_66
30.5
NK_67
30.5
NK_68
30.3
NK_69
30.1
NK_70
29.9
NK_71
29.6
NK_72
29.5
NK_73
29.0
NK_74
27.2
NK_75
27.2
NK_76
26.8
NK_77
26.6
NK_78
26.5
NK_79
26.0
NK_80
25.4
NK_81
24.9
NK_82
22.9
NK_83
22.4
NK_84
22.1
NK_85
19.6
NK_86
18.1
NK_87
17.9
NK_88
16.1
NK_89
15.4
NK_90
14.9
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