We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RPL38
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • RPL38
TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1537.4 nTPM
GTEx:1537.4 nTPM
FANTOM5:2131.2 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA052543
Squamous epithelial cells Not detected

VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1537.4
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1537.4
Samples: 170

Max nTPM: 4191.0
Min nTPM: 828.0
Std nTPM: 454.9
Median nTPM: 1497.0
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 4191.0
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 3692.8
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 3104.2
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 2954.7
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 2523.8
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 2520.8
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 2298.8
GTEX-16NPV-2526-SM-6M483 50-59 years, female 2239.7
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 2230.4
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 2194.2
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 2117.7
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 2087.8
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 2087.1
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 2065.4
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 2033.1
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 2006.0
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 1954.4
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 1937.6
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 1935.0
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 1932.8
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1931.4
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 1926.4
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 1916.3
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 1898.1
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 1894.2
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 1876.9
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 1870.0
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 1857.2
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 1855.7
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1849.6
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 1843.3
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 1830.0
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 1823.4
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 1809.7
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 1802.9
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 1788.3
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 1762.7
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 1762.5
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 1759.3
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1752.8
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 1750.1
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1730.7
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 1725.9
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1705.3
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1693.9
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 1683.6
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 1679.8
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 1661.9
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 1659.1
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 1655.1
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1654.5
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1652.5
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1652.1
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 1650.9
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1648.2
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1647.0
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1638.8
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1630.9
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 1625.4
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 1621.2
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1616.4
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1613.3
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 1613.0
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1609.0
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1598.4
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1593.8
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 1593.7
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 1585.8
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1582.9
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1579.0
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1571.2
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1543.2
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1538.1
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1532.1
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1532.0
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1531.0
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1516.8
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1516.4
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1514.3
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1513.3
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 1511.8
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1504.7
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1503.0
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 1501.2
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1497.4
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1496.6
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 1492.6
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1488.3
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1472.0
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1468.6
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1463.4
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1452.5
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1435.6
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1435.2
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1432.5
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 1432.2
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1428.3
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1422.7
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1406.8
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1398.6
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1392.8
GTEX-11I78-2026-SM-5987C 50-59 years, female 1388.2
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1385.8
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1375.8
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1367.3
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1363.0
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1362.0
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1359.8
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1355.6
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1349.1
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1346.7
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 1340.0
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 1337.0
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1311.9
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1311.4
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1310.2
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1306.4
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1299.6
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1299.5
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1291.8
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1280.2
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1279.8
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1276.1
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1272.0
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1254.9
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1252.3
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1250.9
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1245.2
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1225.5
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1208.6
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1206.9
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1205.2
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1196.9
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1196.7
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1190.6
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1165.6
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1162.6
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1154.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1153.1
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1152.3
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1144.1
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 1129.9
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1129.7
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1118.3
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1117.4
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1114.2
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1111.7
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1107.7
GTEX-1C475-0526-SM-793AC 40-49 years, female 1096.6
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1096.5
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1091.0
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1088.2
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1072.2
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1064.7
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1055.0
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1053.0
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1052.6
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1043.9
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1027.4
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1024.8
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1023.8
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1023.6
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1020.6
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1003.6
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 979.5
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 975.9
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 961.6
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 961.1
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 833.2
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 828.0
Show allShow less

VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2131.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 2131.2
FF:10204-103F6 68 years, female 2131.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo