A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.2
nTPM
Monaco:
16.6
nTPM
Schmiedel:
10.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.2
HPA sample
nTPM
Classical monocyte nTPM: 3.2
Samples: 6
Max nTPM: 5.5
Min nTPM: 1.8
P10809_1003
5.5
P10809_1020
2.7
P10809_1039
1.8
P10809_1058
3.6
P10809_1080
3.3
P10809_1107
2.2
Intermediate monocyte nTPM: 0.9
Samples: 6
Max nTPM: 2.4
Min nTPM: 0.0
P10809_1004
0.5
P10809_1023
0.0
P10809_1042
1.0
P10809_1061
2.4
P10809_1081
1.5
P10809_1108
0.1
Non-classical monocyte nTPM: 0.0
Samples: 5
Max nTPM: 0.2
Min nTPM: 0.0
P10809_1005
0.0
P10809_1053
0.2
P10809_1072
0.0
P10809_1082
0.0
P10809_1109
0.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.6
Monaco sample
nTPM
Classical monocyte nTPM: 16.7
Samples: 4
Max nTPM: 22.5
Min nTPM: 9.0
RHH5313_R3680
19.1
RHH5221_R3593
16.0
RHH5250_R3622
9.0
RHH5279_R3651
22.5
Intermediate monocyte nTPM: 5.4
Samples: 4
Max nTPM: 6.2
Min nTPM: 4.4
RHH5314_R3681
4.9
RHH5222_R3594
5.9
RHH5251_R3623
4.4
RHH5280_R3652
6.2
Non-classical monocyte nTPM: 1.6
Samples: 4
Max nTPM: 2.4
Min nTPM: 1.1
RHH5315_R3682
1.2
RHH5223_R3595
2.4
RHH5252_R3624
1.7
RHH5281_R3653
1.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.8
Schmiedel sample id
TPM
Classical monocyte TPM: 10.8
Samples: 91
Max TPM: 38.2
Min TPM: 3.4
MONOCYTES_1
38.2
MONOCYTES_2
20.8
MONOCYTES_3
20.3
MONOCYTES_4
19.7
MONOCYTES_5
19.2
MONOCYTES_6
18.7
MONOCYTES_7
18.3
MONOCYTES_8
18.2
MONOCYTES_9
17.5
MONOCYTES_10
17.2
MONOCYTES_11
15.4
MONOCYTES_12
15.0
MONOCYTES_13
14.9
MONOCYTES_14
14.6
MONOCYTES_15
14.4
MONOCYTES_16
14.3
MONOCYTES_17
14.0
MONOCYTES_18
13.7
MONOCYTES_19
13.7
MONOCYTES_20
13.5
MONOCYTES_21
13.4
MONOCYTES_22
13.2
MONOCYTES_23
13.2
MONOCYTES_24
13.2
MONOCYTES_25
13.1
MONOCYTES_26
13.1
MONOCYTES_27
12.9
MONOCYTES_28
12.5
MONOCYTES_29
12.4
MONOCYTES_30
12.2
MONOCYTES_31
12.0
MONOCYTES_32
11.8
MONOCYTES_33
11.8
MONOCYTES_34
11.6
MONOCYTES_35
11.4
MONOCYTES_36
11.3
MONOCYTES_37
11.3
MONOCYTES_38
11.1
MONOCYTES_39
11.1
MONOCYTES_40
11.0
MONOCYTES_41
10.9
MONOCYTES_42
10.8
MONOCYTES_43
10.7
MONOCYTES_44
10.7
MONOCYTES_45
10.5
MONOCYTES_46
10.4
MONOCYTES_47
10.0
MONOCYTES_48
9.5
MONOCYTES_49
9.5
MONOCYTES_50
9.4
MONOCYTES_51
9.3
MONOCYTES_52
9.1
MONOCYTES_53
9.1
MONOCYTES_54
8.8
MONOCYTES_55
8.6
MONOCYTES_56
8.6
MONOCYTES_57
8.6
MONOCYTES_58
8.3
MONOCYTES_59
8.2
MONOCYTES_60
8.0
MONOCYTES_61
8.0
MONOCYTES_62
7.9
MONOCYTES_63
7.7
MONOCYTES_64
7.5
MONOCYTES_65
7.4
MONOCYTES_66
7.3
MONOCYTES_67
7.3
MONOCYTES_68
7.2
MONOCYTES_69
7.1
MONOCYTES_70
7.0
MONOCYTES_71
6.9
MONOCYTES_72
6.8
MONOCYTES_73
6.7
MONOCYTES_74
6.5
MONOCYTES_75
6.5
MONOCYTES_76
6.4
MONOCYTES_77
6.3
MONOCYTES_78
6.2
MONOCYTES_79
6.2
MONOCYTES_80
6.1
MONOCYTES_81
6.1
MONOCYTES_82
6.0
MONOCYTES_83
6.0
MONOCYTES_84
6.0
MONOCYTES_85
5.7
MONOCYTES_86
5.7
MONOCYTES_87
4.9
MONOCYTES_88
4.7
MONOCYTES_89
4.6
MONOCYTES_90
3.8
MONOCYTES_91
3.4
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Non-classical monocyte TPM: 1.2
Samples: 90
Max TPM: 3.8
Min TPM: 0.1
M2_1
3.8
M2_2
3.7
M2_3
3.5
M2_4
3.4
M2_5
3.4
M2_6
2.9
M2_7
2.7
M2_8
2.4
M2_9
2.2
M2_10
2.2
M2_11
2.1
M2_12
2.1
M2_13
2.0
M2_14
1.9
M2_15
1.9
M2_16
1.8
M2_17
1.8
M2_18
1.8
M2_19
1.7
M2_20
1.7
M2_21
1.7
M2_22
1.6
M2_23
1.6
M2_24
1.6
M2_25
1.5
M2_26
1.5
M2_27
1.4
M2_28
1.4
M2_29
1.4
M2_30
1.4
M2_31
1.3
M2_32
1.3
M2_33
1.2
M2_34
1.2
M2_35
1.2
M2_36
1.2
M2_37
1.1
M2_38
1.1
M2_39
1.1
M2_40
1.1
M2_41
1.1
M2_42
1.1
M2_43
1.1
M2_44
1.1
M2_45
1.0
M2_46
1.0
M2_47
1.0
M2_48
1.0
M2_49
1.0
M2_50
1.0
M2_51
1.0
M2_52
1.0
M2_53
0.9
M2_54
0.9
M2_55
0.9
M2_56
0.9
M2_57
0.9
M2_58
0.9
M2_59
0.9
M2_60
0.9
M2_61
0.9
M2_62
0.9
M2_63
0.8
M2_64
0.8
M2_65
0.8
M2_66
0.8
M2_67
0.8
M2_68
0.7
M2_69
0.7
M2_70
0.6
M2_71
0.6
M2_72
0.6
M2_73
0.6
M2_74
0.6
M2_75
0.6
M2_76
0.6
M2_77
0.5
M2_78
0.5
M2_79
0.5
M2_80
0.4
M2_81
0.4
M2_82
0.4
M2_83
0.4
M2_84
0.3
M2_85
0.3
M2_86
0.3
M2_87
0.3
M2_88
0.2
M2_89
0.2
M2_90
0.1
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