A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
21.7
nTPM
Monaco:
61.5
nTPM
Schmiedel:
17.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.7
HPA sample
nTPM
Classical monocyte nTPM: 21.7
Samples: 6
Max nTPM: 38.0
Min nTPM: 11.6
P10809_1003
38.0
P10809_1020
23.5
P10809_1039
11.6
P10809_1058
15.4
P10809_1080
20.2
P10809_1107
21.2
Intermediate monocyte nTPM: 19.2
Samples: 6
Max nTPM: 30.9
Min nTPM: 13.7
P10809_1004
30.9
P10809_1023
20.8
P10809_1042
13.7
P10809_1061
20.6
P10809_1081
14.0
P10809_1108
15.4
Non-classical monocyte nTPM: 20.3
Samples: 5
Max nTPM: 29.7
Min nTPM: 11.2
P10809_1005
27.5
P10809_1053
19.6
P10809_1072
29.7
P10809_1082
11.2
P10809_1109
13.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
61.5
Monaco sample
nTPM
Classical monocyte nTPM: 57.1
Samples: 4
Max nTPM: 65.3
Min nTPM: 50.6
RHH5313_R3680
54.0
RHH5221_R3593
58.3
RHH5250_R3622
65.3
RHH5279_R3651
50.6
Intermediate monocyte nTPM: 54.6
Samples: 4
Max nTPM: 61.4
Min nTPM: 47.1
RHH5314_R3681
52.3
RHH5222_R3594
57.4
RHH5251_R3623
47.1
RHH5280_R3652
61.4
Non-classical monocyte nTPM: 61.5
Samples: 4
Max nTPM: 80.2
Min nTPM: 50.4
RHH5315_R3682
60.8
RHH5223_R3595
80.2
RHH5252_R3624
50.4
RHH5281_R3653
54.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.5
Schmiedel sample id
TPM
Classical monocyte TPM: 16.1
Samples: 91
Max TPM: 24.4
Min TPM: 7.8
MONOCYTES_1
24.4
MONOCYTES_2
24.0
MONOCYTES_3
22.0
MONOCYTES_4
21.8
MONOCYTES_5
21.6
MONOCYTES_6
21.1
MONOCYTES_7
21.1
MONOCYTES_8
21.0
MONOCYTES_9
21.0
MONOCYTES_10
20.5
MONOCYTES_11
20.2
MONOCYTES_12
20.0
MONOCYTES_13
19.3
MONOCYTES_14
19.3
MONOCYTES_15
19.0
MONOCYTES_16
18.9
MONOCYTES_17
18.8
MONOCYTES_18
18.4
MONOCYTES_19
18.3
MONOCYTES_20
18.2
MONOCYTES_21
18.0
MONOCYTES_22
17.9
MONOCYTES_23
17.8
MONOCYTES_24
17.8
MONOCYTES_25
17.8
MONOCYTES_26
17.8
MONOCYTES_27
17.7
MONOCYTES_28
17.7
MONOCYTES_29
17.7
MONOCYTES_30
17.6
MONOCYTES_31
17.4
MONOCYTES_32
17.3
MONOCYTES_33
17.2
MONOCYTES_34
17.2
MONOCYTES_35
17.2
MONOCYTES_36
17.1
MONOCYTES_37
17.0
MONOCYTES_38
16.9
MONOCYTES_39
16.9
MONOCYTES_40
16.7
MONOCYTES_41
16.6
MONOCYTES_42
16.6
MONOCYTES_43
16.4
MONOCYTES_44
16.3
MONOCYTES_45
16.3
MONOCYTES_46
16.3
MONOCYTES_47
16.2
MONOCYTES_48
16.2
MONOCYTES_49
16.0
MONOCYTES_50
15.8
MONOCYTES_51
15.8
MONOCYTES_52
15.8
MONOCYTES_53
15.7
MONOCYTES_54
15.7
MONOCYTES_55
15.7
MONOCYTES_56
15.5
MONOCYTES_57
15.5
MONOCYTES_58
15.4
MONOCYTES_59
15.4
MONOCYTES_60
15.3
MONOCYTES_61
15.2
MONOCYTES_62
15.0
MONOCYTES_63
14.9
MONOCYTES_64
14.4
MONOCYTES_65
14.3
MONOCYTES_66
14.3
MONOCYTES_67
14.2
MONOCYTES_68
14.1
MONOCYTES_69
14.1
MONOCYTES_70
13.9
MONOCYTES_71
13.7
MONOCYTES_72
13.7
MONOCYTES_73
13.3
MONOCYTES_74
13.1
MONOCYTES_75
13.1
MONOCYTES_76
13.1
MONOCYTES_77
13.1
MONOCYTES_78
12.9
MONOCYTES_79
12.9
MONOCYTES_80
12.2
MONOCYTES_81
12.1
MONOCYTES_82
12.0
MONOCYTES_83
12.0
MONOCYTES_84
11.1
MONOCYTES_85
11.1
MONOCYTES_86
10.5
MONOCYTES_87
10.5
MONOCYTES_88
9.7
MONOCYTES_89
9.7
MONOCYTES_90
9.5
MONOCYTES_91
7.8
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Non-classical monocyte TPM: 17.5
Samples: 90
Max TPM: 24.5
Min TPM: 7.9
M2_1
24.5
M2_2
24.3
M2_3
24.0
M2_4
23.6
M2_5
23.3
M2_6
23.1
M2_7
22.9
M2_8
22.7
M2_9
22.5
M2_10
22.5
M2_11
22.3
M2_12
22.1
M2_13
22.1
M2_14
22.1
M2_15
22.0
M2_16
22.0
M2_17
21.3
M2_18
21.3
M2_19
21.1
M2_20
21.0
M2_21
20.7
M2_22
20.5
M2_23
20.4
M2_24
20.4
M2_25
20.4
M2_26
20.3
M2_27
20.3
M2_28
20.3
M2_29
20.3
M2_30
20.3
M2_31
20.1
M2_32
20.1
M2_33
20.0
M2_34
20.0
M2_35
19.8
M2_36
19.8
M2_37
19.7
M2_38
19.6
M2_39
19.5
M2_40
19.4
M2_41
19.3
M2_42
19.3
M2_43
19.3
M2_44
19.3
M2_45
18.9
M2_46
18.5
M2_47
18.3
M2_48
18.2
M2_49
18.2
M2_50
18.1
M2_51
17.3
M2_52
17.3
M2_53
17.2
M2_54
17.0
M2_55
16.7
M2_56
16.6
M2_57
16.1
M2_58
16.1
M2_59
16.0
M2_60
16.0
M2_61
15.6
M2_62
15.5
M2_63
15.1
M2_64
15.0
M2_65
15.0
M2_66
14.8
M2_67
14.5
M2_68
14.5
M2_69
14.1
M2_70
14.0
M2_71
13.5
M2_72
13.3
M2_73
12.8
M2_74
12.8
M2_75
12.5
M2_76
12.1
M2_77
11.8
M2_78
11.8
M2_79
11.4
M2_80
11.4
M2_81
11.3
M2_82
11.0
M2_83
10.9
M2_84
10.6
M2_85
10.6
M2_86
10.5
M2_87
9.1
M2_88
9.0
M2_89
8.9
M2_90
7.9
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