A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
24.0
nTPM
Monaco:
33.1
nTPM
Schmiedel:
19.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.0
HPA sample
nTPM
Classical monocyte nTPM: 21.2
Samples: 6
Max nTPM: 31.5
Min nTPM: 13.2
P10809_1003
19.9
P10809_1020
25.9
P10809_1039
31.5
P10809_1058
15.5
P10809_1080
13.2
P10809_1107
20.9
Intermediate monocyte nTPM: 24.0
Samples: 6
Max nTPM: 32.3
Min nTPM: 15.5
P10809_1004
32.3
P10809_1023
26.7
P10809_1042
22.4
P10809_1061
17.2
P10809_1081
15.5
P10809_1108
29.9
Non-classical monocyte nTPM: 21.5
Samples: 5
Max nTPM: 28.8
Min nTPM: 11.6
P10809_1005
28.8
P10809_1053
23.4
P10809_1072
11.6
P10809_1082
18.7
P10809_1109
25.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.1
Monaco sample
nTPM
Classical monocyte nTPM: 33.1
Samples: 4
Max nTPM: 34.1
Min nTPM: 31.7
RHH5313_R3680
31.7
RHH5221_R3593
32.5
RHH5250_R3622
34.1
RHH5279_R3651
33.9
Intermediate monocyte nTPM: 29.5
Samples: 4
Max nTPM: 34.3
Min nTPM: 20.2
RHH5314_R3681
34.3
RHH5222_R3594
20.2
RHH5251_R3623
31.0
RHH5280_R3652
32.6
Non-classical monocyte nTPM: 30.0
Samples: 4
Max nTPM: 36.0
Min nTPM: 24.3
RHH5315_R3682
36.0
RHH5223_R3595
24.3
RHH5252_R3624
34.5
RHH5281_R3653
25.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.5
Schmiedel sample id
TPM
Classical monocyte TPM: 17.5
Samples: 91
Max TPM: 25.0
Min TPM: 10.0
MONOCYTES_1
25.0
MONOCYTES_2
25.0
MONOCYTES_3
25.0
MONOCYTES_4
24.5
MONOCYTES_5
23.5
MONOCYTES_6
23.4
MONOCYTES_7
23.0
MONOCYTES_8
22.5
MONOCYTES_9
22.4
MONOCYTES_10
22.3
MONOCYTES_11
22.2
MONOCYTES_12
22.2
MONOCYTES_13
21.6
MONOCYTES_14
21.6
MONOCYTES_15
21.4
MONOCYTES_16
21.2
MONOCYTES_17
21.2
MONOCYTES_18
20.9
MONOCYTES_19
20.8
MONOCYTES_20
20.7
MONOCYTES_21
20.7
MONOCYTES_22
20.6
MONOCYTES_23
20.5
MONOCYTES_24
19.9
MONOCYTES_25
19.8
MONOCYTES_26
19.8
MONOCYTES_27
19.8
MONOCYTES_28
19.7
MONOCYTES_29
19.7
MONOCYTES_30
19.6
MONOCYTES_31
19.4
MONOCYTES_32
19.2
MONOCYTES_33
18.9
MONOCYTES_34
18.9
MONOCYTES_35
18.1
MONOCYTES_36
18.1
MONOCYTES_37
18.1
MONOCYTES_38
18.1
MONOCYTES_39
18.0
MONOCYTES_40
18.0
MONOCYTES_41
17.9
MONOCYTES_42
17.9
MONOCYTES_43
17.9
MONOCYTES_44
17.9
MONOCYTES_45
17.9
MONOCYTES_46
17.7
MONOCYTES_47
17.6
MONOCYTES_48
17.5
MONOCYTES_49
17.1
MONOCYTES_50
17.1
MONOCYTES_51
17.1
MONOCYTES_52
17.0
MONOCYTES_53
17.0
MONOCYTES_54
16.8
MONOCYTES_55
16.7
MONOCYTES_56
16.4
MONOCYTES_57
16.2
MONOCYTES_58
15.9
MONOCYTES_59
15.9
MONOCYTES_60
15.8
MONOCYTES_61
15.7
MONOCYTES_62
15.7
MONOCYTES_63
15.7
MONOCYTES_64
15.6
MONOCYTES_65
15.6
MONOCYTES_66
15.3
MONOCYTES_67
15.3
MONOCYTES_68
15.2
MONOCYTES_69
15.0
MONOCYTES_70
15.0
MONOCYTES_71
15.0
MONOCYTES_72
14.8
MONOCYTES_73
14.6
MONOCYTES_74
14.4
MONOCYTES_75
14.2
MONOCYTES_76
13.7
MONOCYTES_77
13.6
MONOCYTES_78
13.1
MONOCYTES_79
13.0
MONOCYTES_80
12.9
MONOCYTES_81
12.6
MONOCYTES_82
12.5
MONOCYTES_83
12.3
MONOCYTES_84
12.3
MONOCYTES_85
11.3
MONOCYTES_86
11.2
MONOCYTES_87
11.0
MONOCYTES_88
10.5
MONOCYTES_89
10.4
MONOCYTES_90
10.1
MONOCYTES_91
10.0
Show allShow less
Non-classical monocyte TPM: 19.5
Samples: 90
Max TPM: 31.6
Min TPM: 6.4
M2_1
31.6
M2_2
30.8
M2_3
30.2
M2_4
29.1
M2_5
28.6
M2_6
27.2
M2_7
26.8
M2_8
25.3
M2_9
25.3
M2_10
25.0
M2_11
25.0
M2_12
24.9
M2_13
24.9
M2_14
24.6
M2_15
24.6
M2_16
24.5
M2_17
24.5
M2_18
24.4
M2_19
24.4
M2_20
24.3
M2_21
23.7
M2_22
23.6
M2_23
23.5
M2_24
23.5
M2_25
23.3
M2_26
23.3
M2_27
23.0
M2_28
22.8
M2_29
22.6
M2_30
22.5
M2_31
22.5
M2_32
22.5
M2_33
22.3
M2_34
22.1
M2_35
21.9
M2_36
21.7
M2_37
21.5
M2_38
21.4
M2_39
21.3
M2_40
20.9
M2_41
20.8
M2_42
20.6
M2_43
20.5
M2_44
20.4
M2_45
20.3
M2_46
20.3
M2_47
20.1
M2_48
20.0
M2_49
19.1
M2_50
19.0
M2_51
18.8
M2_52
18.8
M2_53
18.5
M2_54
18.5
M2_55
18.2
M2_56
18.2
M2_57
18.2
M2_58
17.8
M2_59
17.5
M2_60
17.3
M2_61
17.0
M2_62
16.7
M2_63
16.6
M2_64
16.6
M2_65
16.2
M2_66
16.2
M2_67
15.9
M2_68
15.5
M2_69
15.2
M2_70
14.7
M2_71
14.4
M2_72
14.3
M2_73
14.1
M2_74
13.8
M2_75
13.7
M2_76
13.4
M2_77
13.2
M2_78
12.8
M2_79
12.5
M2_80
12.4
M2_81
12.1
M2_82
11.9
M2_83
11.8
M2_84
11.7
M2_85
11.5
M2_86
11.2
M2_87
10.8
M2_88
8.3
M2_89
7.4
M2_90
6.4
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
