A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
130.9
nTPM
Monaco:
307.1
nTPM
Schmiedel:
20.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
130.9
HPA sample
nTPM
Memory B-cell nTPM: 119.7
Samples: 6
Max nTPM: 134.3
Min nTPM: 102.8
P10809_1017
103.2
P10809_1025
133.2
P10809_1044
118.8
P10809_1063
134.3
P10809_1092
126.1
P10809_1105
102.8
Naive B-cell nTPM: 131.0
Samples: 6
Max nTPM: 193.0
Min nTPM: 89.3
P10809_1011
89.3
P10809_1029
135.3
P10809_1048
193.0
P10809_1067
112.8
P10809_1091
125.7
P10809_1104
129.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
307.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 236.4
Samples: 4
Max nTPM: 278.7
Min nTPM: 209.9
RHH5310_R3677
244.2
RHH5218_R3590
278.7
RHH5247_R3619
209.9
RHH5276_R3648
212.8
Naive B-cell nTPM: 231.4
Samples: 4
Max nTPM: 282.3
Min nTPM: 166.6
RHH5308_R3675
282.3
RHH5216_R3588
231.8
RHH5245_R3617
166.6
RHH5274_R3646
244.7
Non-switched memory B-cell nTPM: 222.0
Samples: 4
Max nTPM: 229.6
Min nTPM: 210.3
RHH5309_R3676
226.6
RHH5217_R3589
221.4
RHH5246_R3618
229.6
RHH5275_R3647
210.3
Plasmablast nTPM: 307.1
Samples: 4
Max nTPM: 358.2
Min nTPM: 249.1
RHH5312_R3679
343.0
RHH5220_R3592
358.2
RHH5249_R3621
249.1
RHH5278_R3650
278.1
Switched memory B-cell nTPM: 243.1
Samples: 4
Max nTPM: 264.4
Min nTPM: 218.2
RHH5311_R3678
262.3
RHH5219_R3591
264.4
RHH5248_R3620
227.3
RHH5277_R3649
218.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.2
Schmiedel sample id
TPM
Naive B-cell TPM: 20.2
Samples: 91
Max TPM: 30.7
Min TPM: 8.6
B_CELL_NAIVE_1
30.7
B_CELL_NAIVE_2
30.4
B_CELL_NAIVE_3
29.7
B_CELL_NAIVE_4
26.4
B_CELL_NAIVE_5
25.7
B_CELL_NAIVE_6
24.7
B_CELL_NAIVE_7
24.6
B_CELL_NAIVE_8
24.6
B_CELL_NAIVE_9
24.5
B_CELL_NAIVE_10
24.5
B_CELL_NAIVE_11
24.4
B_CELL_NAIVE_12
24.4
B_CELL_NAIVE_13
24.3
B_CELL_NAIVE_14
24.1
B_CELL_NAIVE_15
23.8
B_CELL_NAIVE_16
23.8
B_CELL_NAIVE_17
23.8
B_CELL_NAIVE_18
23.5
B_CELL_NAIVE_19
23.1
B_CELL_NAIVE_20
23.1
B_CELL_NAIVE_21
23.0
B_CELL_NAIVE_22
22.6
B_CELL_NAIVE_23
22.3
B_CELL_NAIVE_24
22.2
B_CELL_NAIVE_25
22.1
B_CELL_NAIVE_26
22.1
B_CELL_NAIVE_27
22.1
B_CELL_NAIVE_28
22.0
B_CELL_NAIVE_29
21.9
B_CELL_NAIVE_30
21.9
B_CELL_NAIVE_31
21.8
B_CELL_NAIVE_32
21.7
B_CELL_NAIVE_33
21.6
B_CELL_NAIVE_34
21.6
B_CELL_NAIVE_35
21.5
B_CELL_NAIVE_36
21.4
B_CELL_NAIVE_37
21.2
B_CELL_NAIVE_38
21.2
B_CELL_NAIVE_39
21.1
B_CELL_NAIVE_40
21.0
B_CELL_NAIVE_41
20.9
B_CELL_NAIVE_42
20.9
B_CELL_NAIVE_43
20.7
B_CELL_NAIVE_44
20.7
B_CELL_NAIVE_45
20.6
B_CELL_NAIVE_46
20.4
B_CELL_NAIVE_47
20.3
B_CELL_NAIVE_48
20.1
B_CELL_NAIVE_49
20.1
B_CELL_NAIVE_50
20.0
B_CELL_NAIVE_51
20.0
B_CELL_NAIVE_52
20.0
B_CELL_NAIVE_53
19.9
B_CELL_NAIVE_54
19.8
B_CELL_NAIVE_55
19.8
B_CELL_NAIVE_56
19.7
B_CELL_NAIVE_57
19.4
B_CELL_NAIVE_58
19.1
B_CELL_NAIVE_59
19.0
B_CELL_NAIVE_60
19.0
B_CELL_NAIVE_61
18.9
B_CELL_NAIVE_62
18.8
B_CELL_NAIVE_63
18.5
B_CELL_NAIVE_64
18.5
B_CELL_NAIVE_65
18.4
B_CELL_NAIVE_66
18.3
B_CELL_NAIVE_67
18.2
B_CELL_NAIVE_68
18.1
B_CELL_NAIVE_69
18.0
B_CELL_NAIVE_70
18.0
B_CELL_NAIVE_71
17.8
B_CELL_NAIVE_72
17.5
B_CELL_NAIVE_73
17.5
B_CELL_NAIVE_74
17.4
B_CELL_NAIVE_75
17.4
B_CELL_NAIVE_76
16.0
B_CELL_NAIVE_77
15.9
B_CELL_NAIVE_78
15.7
B_CELL_NAIVE_79
15.7
B_CELL_NAIVE_80
15.6
B_CELL_NAIVE_81
15.5
B_CELL_NAIVE_82
15.5
B_CELL_NAIVE_83
14.9
B_CELL_NAIVE_84
14.9
B_CELL_NAIVE_85
14.6
B_CELL_NAIVE_86
14.1
B_CELL_NAIVE_87
13.8
B_CELL_NAIVE_88
13.1
B_CELL_NAIVE_89
12.4
B_CELL_NAIVE_90
9.6
B_CELL_NAIVE_91
8.6
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