BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.1 nTPM
HPA Brain:179.8 nTPM
GTEx:17.1 nTPM
FANTOM5:132.5 Scaled Tags Per Million
Macaque:243.4 nTPM
Mouse:228.0 nTPM
Rat:226.9 nTPM
Pig:176.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 179.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 134.0
2019 Male, age 18, unknown 184.3
2586 Male, age 75, left hemisphere 172.5
2411 Female, age 72, unknown 153.0
1827 Male, age 72, unknown 147.4
2828 Female, age 72, unknown 127.2
2666 Male, age 74, left hemisphere 120.4
1833 Male, age 53, unknown 114.6
2219 Male, age 76, both hemispheres 111.2
1870 Female, age 42, unknown 109.7
1830 Male, age 51, unknown 100.1
Dorsal raphe nucleus
nTPM: 130.5
2298 Female, age 72, unknown 162.1
1828 Male, age 53, unknown 138.1
2047 Male, age 72, unknown 122.3
2016 Female, age 72, unknown 121.7
2750 Male, age 76, both hemispheres 108.2
Inferior colliculus
nTPM: 125.7
2097 Female, age 72, unknown 146.1
1890 Male, age 53, unknown 137.9
1848 Female, age 42, unknown 120.4
2849 Male, age 72, unknown 98.5
Median raphe nucleus
nTPM: 113.5
2220 Male, age 76, midline 113.5
Periaquaductal grey, anterior
nTPM: 132.5
2502 Female, age 75, unknown 153.3
1795 Male, age 51, unknown 139.4
1947 Male, age 18, unknown 104.8
Periaquaductal grey, dorsal
nTPM: 120.2
2464 Female, age 72, unknown 132.2
1840 Male, age 53, unknown 128.5
1831 Male, age 72, unknown 122.7
2850 Male, age 76, both hemispheres 97.4
Periaquaductal grey, lateral
nTPM: 116.7
2053 Male, age 18, unknown 119.5
2140 Male, age 76, both hemispheres 116.1
2272 Male, age 74, both hemispheres 114.5
Pretectal area
nTPM: 179.8
1816 Male, age 51, unknown 274.5
2007 Male, age 72, unknown 270.6
1817 Female, age 42, unknown 233.6
1815 Male, age 53, unknown 214.6
1944 Female, age 72, unknown 205.2
2667 Female, age 75, unknown 162.6
2273 Male, age 74, both hemispheres 144.2
2224 Female, age 72, unknown 134.9
2407 Male, age 75, both hemispheres 128.3
2316 Male, age 76, right hemisphere 105.7
2825 Male, age 18, unknown 103.9
Red nucleus
nTPM: 132.2
2785 Male, age 18, unknown 191.5
2503 Female, age 72, unknown 157.0
1821 Female, age 72, unknown 139.2
2588 Male, age 74, left hemisphere 138.8
2584 Male, age 75, left hemisphere 133.2
1904 Male, age 53, unknown 125.1
2227 Male, age 72, unknown 123.9
2769 Male, age 72, unknown 120.5
1865 Male, age 51, unknown 120.3
2725 Female, age 75, unknown 119.7
1954 Female, age 42, unknown 109.6
2823 Male, age 76, right hemisphere 107.2
Substantia nigra
nTPM: 137.1
1889 Female, age 72, unknown 174.4
2665 Male, age 74, both hemispheres 155.4
2583 Male, age 75, right hemisphere 151.0
1916 Female, age 42, unknown 150.0
1851 Male, age 51, unknown 146.3
2409 Female, age 72, unknown 142.6
2590 Female, age 75, unknown 136.2
1941 Male, age 53, unknown 118.2
2241 Male, age 72, unknown 104.6
2699 Male, age 18, unknown 92.5
Superior colliculus
nTPM: 147.9
2261 Male, age 18, unknown 205.0
2087 Female, age 72, unknown 197.8
1995 Male, age 72, unknown 155.1
1796 Male, age 53, unknown 144.7
2668 Female, age 75, unknown 140.1
2664 Male, age 75, both hemispheres 137.3
1913 Female, age 42, unknown 135.9
2587 Male, age 74, left hemisphere 133.4
1839 Male, age 51, unknown 118.0
1895 Male, age 76, right hemisphere 111.5
Ventral tegmental area
nTPM: 126.3
2410 Female, age 72, unknown 169.5
1915 Female, age 42, unknown 128.9
2218 Male, age 76, both hemispheres 124.3
1942 Male, age 51, unknown 117.0
2223 Female, age 72, unknown 111.8
2021 Male, age 53, unknown 106.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.1
Samples: 183

Max nTPM: 45.6
Min nTPM: 3.5
Std nTPM: 7.7
Median nTPM: 14.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 45.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 42.1
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 39.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 38.4
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 36.9
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 35.8
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 35.3
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 34.6
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 34.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 33.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 32.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 132.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 132.5
FF:10158-103A5 76 years, female 132.5

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 243.4
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 139.7
Samples: 1

Max nTPM: 139.7
Min nTPM: 139.7
Sample A 139.7
Midbrain
nTPM: 136.5
Samples: 1

Max nTPM: 136.5
Min nTPM: 136.5
Sample A 136.5
Superior colliculi
nTPM: 243.4
Samples: 1

Max nTPM: 243.4
Min nTPM: 243.4
Sample A 243.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 176.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 114.4
Samples: 3

Max nTPM: 127.8
Min nTPM: 96.1
Sample A Female 127.8
Sample B Female 96.1
Sample C Male 119.4
Midbrain
nTPM: 170.1
Samples: 3

Max nTPM: 282.6
Min nTPM: 92.9
Sample B Female 92.9
Sample C Male 282.6
Sample D Male 134.8
Periaqueductal gray
nTPM: 89.5
Samples: 3

Max nTPM: 96.4
Min nTPM: 76.9
Sample B Female 95.2
Sample C Male 96.4
Sample D Male 76.9
Superior colliculi
nTPM: 176.3
Samples: 4

Max nTPM: 281.8
Min nTPM: 119.5
Sample A Female 138.2
Sample B Female 119.5
Sample C Male 281.8
Sample D Male 165.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 228.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 228.0
Samples: 4

Max nTPM: 248.1
Min nTPM: 189.1
Sample A 189.1
Sample B 241.0
Sample C 248.1
Sample D 233.7

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 226.9
Rat sample Sample description nTPM
Midbrain
nTPM: 226.9
Samples: 4

Max nTPM: 234.4
Min nTPM: 221.6
Sample A 234.4
Sample A 228.8
Sample A 221.6
Sample A 222.8

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