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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

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  • EVOLUTION

  • RPL4
EVOLUTIONARY HIPPOCAMPAL FORMATION Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:381.7 nTPM
HPA Brain:171.5 nTPM
GTEx:381.7 nTPM
FANTOM5:15.3 Scaled Tags Per Million
Macaque:271.2 nTPM
Mouse:393.6 nTPM
Rat:217.9 nTPM
Pig:361.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA034600
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - PROTEINTALKS DB MS
Median intensity 110977
Sample Intensity
Hippocampal formation_01
91228
Hippocampal formation_02
112430
Hippocampal formation_03
32264
Hippocampal formation_04
112106
Hippocampal formation_05
109847
Hippocampal formation_06
117453

HIPPOCAMPAL FORMATION - HPA Brain Stereo-seq

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

171.5
Sample id Sample description nTPM
Dentate gyrus
nTPM: 171.5
2530 Female, age 94, left hemisphere 329.0
2531 Female, age 67, both hemispheres 189.0
1927 Female, age 91, both hemispheres 154.2
2246 Female, age 85, both hemispheres 126.2
2528 Male, age 74, both hemispheres 124.2
2010 Male, age 76, both hemispheres 106.3
Entorhinal gyrus
nTPM: 107.2
2686 Male, age 75, right hemisphere 172.1
1938 Female, age 85, left hemisphere 159.4
1787 Male, age 76, left hemisphere 148.8
2764 Male, age 80, right hemisphere 78.7
2613 Female, age 94, left hemisphere 50.7
2117 Female, age 91, right hemisphere 33.8
Hippocampus, CA1
nTPM: 97.3
2527 Male, age 74, both hemispheres 169.0
1873 Female, age 85, both hemispheres 103.3
2749 Male, age 80, left hemisphere 96.4
2082 Female, age 91, right hemisphere 71.8
2045 Male, age 76, both hemispheres 46.1
Hippocampus, CA2
nTPM: 130.5
2437 Female, age 94, left hemisphere 231.1
2249 Male, age 74, both hemispheres 167.1
1940 Female, age 85, left hemisphere 128.9
1892 Male, age 76, both hemispheres 123.7
2113 Female, age 91, right hemisphere 94.5
1963 Male, age 80, left hemisphere 37.5
Hippocampus, CA3
nTPM: 111.1
2436 Male, age 74, both hemispheres 177.2
1867 Male, age 76, both hemispheres 136.6
1891 Female, age 85, both hemispheres 111.6
2861 Female, age 67, both hemispheres 84.0
2620 Female, age 94, left hemisphere 78.9
2137 Male, age 80, left hemisphere 78.1
Parahippocampal cortex
nTPM: 122.8
1850 Male, age 80, both hemispheres 184.3
2250 Female, age 67, right hemisphere 167.3
2532 Female, age 72, left hemisphere 164.6
2245 Female, age 91, both hemispheres 138.6
2692 Male, age 74, both hemispheres 126.0
1933 Female, age 85, both hemispheres 122.4
1990 Female, age 91, right hemisphere 109.3
2018 Male, age 76, both hemispheres 97.7
2693 Female, age 94, both hemispheres 85.3
2622 Female, age 67, right hemisphere 32.6
Perirhinal gyrus
nTPM: 168.0
1794 Male, age 80, right hemisphere 193.8
2521 Female, age 94, right hemisphere 178.4
1847 Female, age 91, left hemisphere 173.7
2848 Male, age 76, right hemisphere 149.5
1841 Female, age 85, right hemisphere 144.6
Subiculum
nTPM: 106.3
2438 Female, age 94, left hemisphere 226.6
1977 Female, age 85, both hemispheres 137.6
1901 Male, age 80, both hemispheres 123.1
2042 Male, age 76, both hemispheres 73.5
2729 Female, age 91, right hemisphere 57.2
2619 Male, age 74, both hemispheres 20.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

381.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 381.7
Samples: 255

Max nTPM: 760.6
Min nTPM: 162.2
Std nTPM: 107.5
Median nTPM: 361.1
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 760.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 741.2
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 730.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 711.7
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 676.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 662.4
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 641.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 639.8
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 635.0
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 602.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 600.6
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 591.0
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 582.2
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 576.7
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 572.7
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 569.5
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 568.2
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 567.5
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 556.2
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 554.6
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 553.9
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 540.5
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 540.4
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 539.5
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 528.2
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 525.3
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 523.5
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 523.5
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 521.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 506.6
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 504.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 502.1
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 501.1
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 500.4
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 498.0
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 497.5
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 495.5
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 494.1
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 490.1
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 487.6
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 487.0
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 485.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 483.1
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 477.2
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 470.7
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 468.9
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 468.2
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 465.5
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 462.6
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 460.6
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 460.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 457.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 457.0
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 455.8
GTEX-13VXU-0011-R1a-SM-GINAT 50-59 years, male 455.2
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 453.3
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 451.2
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 449.6
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 448.9
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 448.5
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 447.9
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 445.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 444.0
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 442.5
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 442.1
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 441.4
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 439.0
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 438.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 437.2
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 435.4
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 434.1
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 432.7
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 431.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 431.2
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 428.2
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 427.5
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 426.9
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 424.2
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 422.4
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 422.2
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 422.0
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 419.7
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 413.3
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 412.2
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 411.8
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 410.0
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 407.4
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 407.0
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 405.2
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 404.2
GTEX-11PRG-0011-R1b-SM-H7OHD 50-59 years, male 402.4
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 402.0
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 401.7
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 401.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 400.0
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 396.1
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 395.0
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 393.9
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 392.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 392.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 390.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 390.1
GTEX-11NV4-0011-R1a-SM-GINAK 60-69 years, male 389.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 389.6
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 389.1
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 386.2
GTEX-ZAK1-0011-R1a-SM-GRR1R 50-59 years, female 383.9
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 382.2
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 381.4
GTEX-RU72-0011-R1A-SM-HAUZG 50-59 years, female 380.9
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 379.7
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 377.1
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 376.5
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 375.4
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 374.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 373.2
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 373.0
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 372.3
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 372.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 371.9
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 369.9
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 369.1
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 368.5
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 367.7
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 367.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 366.2
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 363.9
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 361.1
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 360.1
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 358.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 358.3
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 356.8
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 356.1
GTEX-14BMV-0011-R1b-SM-G9ERL 50-59 years, male 354.3
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 353.8
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 352.6
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 351.6
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 351.4
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 348.6
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 347.6
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 347.2
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 346.7
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 344.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 343.4
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 343.1
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 343.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 342.5
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 340.2
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 339.9
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 339.2
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 339.0
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 338.7
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 338.1
GTEX-1N2EE-0011-R1a-SM-F3K5K 60-69 years, male 337.9
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 335.3
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 334.4
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 334.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 333.0
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 332.2
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 331.4
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 330.9
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 329.9
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 329.0
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 328.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 326.9
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 325.8
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 325.7
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 324.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 324.1
GTEX-1JMLX-0011-R1b-SM-G9ERV 50-59 years, male 323.9
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 323.8
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 323.5
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 322.3
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 320.1
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 319.2
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 318.8
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 317.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 317.1
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 317.0
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 316.2
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 315.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 314.7
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 312.4
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 312.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 311.3
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 311.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 310.5
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 308.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 308.2
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 307.9
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 307.3
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 306.7
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 306.0
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 304.8
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 304.2
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 303.8
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 302.7
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 302.1
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 302.0
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 301.7
GTEX-1JMOU-0011-R1b-SM-F341B 60-69 years, female 301.7
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 298.4
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 296.1
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 296.0
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 294.2
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 294.1
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 293.2
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 292.8
GTEX-1QMI2-0011-R1b-SM-F3K5Q 60-69 years, male 292.6
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 291.1
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 289.4
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 289.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 288.7
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 288.5
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 286.6
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 284.7
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 283.7
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 283.6
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 281.2
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 278.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 275.2
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 274.7
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 273.6
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 273.5
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 271.4
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 270.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 269.3
GTEX-1QP6S-0011-R1b-SM-F3K59 40-49 years, male 265.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 262.8
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 260.2
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 259.5
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 254.3
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 253.6
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 252.2
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 250.6
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 250.2
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 249.7
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 247.2
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 245.6
GTEX-1RQED-0011-R1a-SM-F3K5W 60-69 years, male 244.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 243.7
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 240.6
GTEX-ZYY3-0011-R1b-SM-GPI92 60-69 years, female 237.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 235.7
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 235.0
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 232.0
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 224.6
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 219.8
GTEX-1RDX4-0011-R1a-SM-F3K5H 50-59 years, female 214.4
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 210.6
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 207.7
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 204.0
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 203.0
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 201.5
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 162.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

15.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 15.3
FF:10169-103B7 60 years, female 18.6
FF:10153-102I9 76 years, female 12.0

HIPPOCAMPAL FORMATION - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

271.2
Macaque sample Sample description nTPM
Subiculum
nTPM: 186.7
Samples: 1

Max nTPM: 186.7
Min nTPM: 186.7
Sample A 186.7
Entorhinal cortex
nTPM: 271.2
Samples: 2

Max nTPM: 299.5
Min nTPM: 242.9
Sample A 299.5
Sample B 242.9
Hippocampal formation
nTPM: 224.0
Samples: 4

Max nTPM: 291.1
Min nTPM: 169.8
Sample A 183.5
Sample B 169.8
Sample C 251.6
Sample D 291.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

361.3
Pig sample Sample description nTPM
Subiculum
nTPM: 297.1
Samples: 4

Max nTPM: 416.8
Min nTPM: 247.0
Sample A Female 416.8
Sample B Female 267.0
Sample C Male 247.0
Sample D Male 257.5
Dorsal hippocampus
nTPM: 361.3
Samples: 4

Max nTPM: 450.5
Min nTPM: 305.8
Sample A Female 450.5
Sample B Female 347.9
Sample C Male 341.0
Sample D Male 305.8
Entorhinal cortex
nTPM: 283.9
Samples: 4

Max nTPM: 343.1
Min nTPM: 219.0
Sample A Female 274.5
Sample B Female 343.1
Sample C Male 298.9
Sample D Male 219.0
Ventral hippocampus
nTPM: 315.3
Samples: 4

Max nTPM: 347.7
Min nTPM: 285.3
Sample A Female 319.0
Sample B Female 285.3
Sample C Male 309.0
Sample D Male 347.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

393.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 371.4
Samples: 4

Max nTPM: 386.5
Min nTPM: 336.5
Sample A 380.7
Sample B 382.0
Sample C 386.5
Sample D 336.5
Hippocampal formation
nTPM: 393.6
Samples: 4

Max nTPM: 446.7
Min nTPM: 348.5
Sample A 446.7
Sample B 374.0
Sample C 348.5
Sample D 405.3

HIPPOCAMPAL FORMATION - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

217.9
Rat sample Sample description nTPM
Entorhinal cortex
nTPM: 194.1
Samples: 4

Max nTPM: 206.3
Min nTPM: 184.3
Sample A 206.3
Sample A 196.0
Sample A 189.6
Sample B 184.3
Ventral hippocampus
nTPM: 217.9
Samples: 4

Max nTPM: 230.7
Min nTPM: 197.2
Sample A 226.9
Sample A 197.2
Sample A 230.7
Sample A 216.9

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