A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.3
nTPM
Monaco:
16.0
nTPM
Schmiedel:
22.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.3
HPA sample
nTPM
NK-cell nTPM: 1.3
Samples: 6
Max nTPM: 6.0
Min nTPM: 0.0
P10809_1013
1.0
P10809_1033
0.7
P10809_1052
0.0
P10809_1071
6.0
P10809_1093
0.0
P10809_1103
0.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.0
Monaco sample
nTPM
NK-cell nTPM: 16.0
Samples: 4
Max nTPM: 22.6
Min nTPM: 7.6
RHH5316_R3683
22.6
RHH5224_R3596
14.4
RHH5253_R3625
19.5
RHH5282_R3654
7.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.2
Schmiedel sample id
TPM
NK-cell TPM: 22.2
Samples: 90
Max TPM: 62.8
Min TPM: 2.7
NK_1
62.8
NK_2
54.9
NK_3
51.0
NK_4
47.1
NK_5
45.8
NK_6
45.4
NK_7
42.5
NK_8
41.3
NK_9
40.0
NK_10
39.6
NK_11
38.4
NK_12
37.1
NK_13
33.7
NK_14
32.5
NK_15
29.9
NK_16
29.7
NK_17
29.7
NK_18
29.5
NK_19
29.4
NK_20
29.4
NK_21
29.3
NK_22
27.8
NK_23
27.2
NK_24
27.2
NK_25
26.2
NK_26
25.8
NK_27
25.7
NK_28
25.6
NK_29
25.5
NK_30
25.3
NK_31
24.9
NK_32
24.8
NK_33
24.6
NK_34
24.6
NK_35
24.5
NK_36
23.6
NK_37
23.2
NK_38
22.6
NK_39
22.5
NK_40
22.2
NK_41
21.8
NK_42
21.8
NK_43
21.5
NK_44
21.5
NK_45
20.8
NK_46
20.7
NK_47
19.8
NK_48
19.1
NK_49
18.8
NK_50
18.3
NK_51
17.7
NK_52
17.0
NK_53
16.8
NK_54
16.7
NK_55
16.5
NK_56
16.4
NK_57
15.8
NK_58
15.6
NK_59
15.6
NK_60
15.6
NK_61
15.5
NK_62
15.1
NK_63
15.0
NK_64
14.9
NK_65
14.8
NK_66
14.7
NK_67
14.6
NK_68
14.5
NK_69
14.5
NK_70
13.9
NK_71
13.4
NK_72
13.1
NK_73
12.9
NK_74
12.7
NK_75
12.4
NK_76
12.3
NK_77
12.2
NK_78
11.8
NK_79
10.9
NK_80
10.8
NK_81
10.4
NK_82
10.1
NK_83
8.6
NK_84
8.4
NK_85
7.8
NK_86
6.8
NK_87
6.6
NK_88
6.5
NK_89
3.6
NK_90
2.7
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