A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.2
nTPM
Monaco:
33.3
nTPM
Schmiedel:
26.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.2
HPA sample
nTPM
Memory B-cell nTPM: 10.3
Samples: 6
Max nTPM: 16.4
Min nTPM: 5.2
P10809_1017
15.4
P10809_1025
16.4
P10809_1044
10.7
P10809_1063
5.9
P10809_1092
5.2
P10809_1105
8.1
Naive B-cell nTPM: 12.1
Samples: 6
Max nTPM: 14.7
Min nTPM: 7.7
P10809_1011
14.3
P10809_1029
10.6
P10809_1048
14.7
P10809_1067
7.7
P10809_1091
12.5
P10809_1104
13.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 32.5
Samples: 4
Max nTPM: 50.4
Min nTPM: 18.9
RHH5310_R3677
50.4
RHH5218_R3590
23.5
RHH5247_R3619
37.0
RHH5276_R3648
18.9
Naive B-cell nTPM: 25.6
Samples: 4
Max nTPM: 37.5
Min nTPM: 15.9
RHH5308_R3675
37.5
RHH5216_R3588
15.9
RHH5245_R3617
20.5
RHH5274_R3646
28.5
Non-switched memory B-cell nTPM: 4.2
Samples: 4
Max nTPM: 6.7
Min nTPM: 1.3
RHH5309_R3676
6.7
RHH5217_R3589
1.3
RHH5246_R3618
5.1
RHH5275_R3647
3.5
Plasmablast nTPM: 11.5
Samples: 4
Max nTPM: 17.6
Min nTPM: 5.7
RHH5312_R3679
14.6
RHH5220_R3592
5.7
RHH5249_R3621
17.6
RHH5278_R3650
8.0
Switched memory B-cell nTPM: 33.3
Samples: 4
Max nTPM: 47.7
Min nTPM: 17.4
RHH5311_R3678
47.7
RHH5219_R3591
17.4
RHH5248_R3620
41.1
RHH5277_R3649
27.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.4
Schmiedel sample id
TPM
Naive B-cell TPM: 26.4
Samples: 91
Max TPM: 45.4
Min TPM: 11.3
B_CELL_NAIVE_1
45.4
B_CELL_NAIVE_2
42.7
B_CELL_NAIVE_3
42.5
B_CELL_NAIVE_4
42.4
B_CELL_NAIVE_5
41.9
B_CELL_NAIVE_6
41.5
B_CELL_NAIVE_7
41.5
B_CELL_NAIVE_8
38.6
B_CELL_NAIVE_9
37.8
B_CELL_NAIVE_10
37.7
B_CELL_NAIVE_11
37.7
B_CELL_NAIVE_12
37.7
B_CELL_NAIVE_13
37.0
B_CELL_NAIVE_14
36.6
B_CELL_NAIVE_15
36.3
B_CELL_NAIVE_16
34.6
B_CELL_NAIVE_17
34.4
B_CELL_NAIVE_18
34.2
B_CELL_NAIVE_19
33.4
B_CELL_NAIVE_20
32.8
B_CELL_NAIVE_21
32.7
B_CELL_NAIVE_22
32.4
B_CELL_NAIVE_23
32.2
B_CELL_NAIVE_24
31.1
B_CELL_NAIVE_25
30.5
B_CELL_NAIVE_26
29.9
B_CELL_NAIVE_27
29.6
B_CELL_NAIVE_28
29.5
B_CELL_NAIVE_29
29.4
B_CELL_NAIVE_30
29.2
B_CELL_NAIVE_31
28.5
B_CELL_NAIVE_32
28.4
B_CELL_NAIVE_33
28.3
B_CELL_NAIVE_34
28.3
B_CELL_NAIVE_35
27.9
B_CELL_NAIVE_36
27.5
B_CELL_NAIVE_37
27.4
B_CELL_NAIVE_38
27.3
B_CELL_NAIVE_39
27.3
B_CELL_NAIVE_40
27.2
B_CELL_NAIVE_41
27.1
B_CELL_NAIVE_42
26.5
B_CELL_NAIVE_43
26.4
B_CELL_NAIVE_44
26.2
B_CELL_NAIVE_45
26.2
B_CELL_NAIVE_46
25.9
B_CELL_NAIVE_47
25.6
B_CELL_NAIVE_48
25.2
B_CELL_NAIVE_49
25.0
B_CELL_NAIVE_50
24.2
B_CELL_NAIVE_51
23.7
B_CELL_NAIVE_52
23.7
B_CELL_NAIVE_53
23.0
B_CELL_NAIVE_54
22.9
B_CELL_NAIVE_55
22.9
B_CELL_NAIVE_56
22.8
B_CELL_NAIVE_57
22.5
B_CELL_NAIVE_58
22.5
B_CELL_NAIVE_59
22.0
B_CELL_NAIVE_60
21.7
B_CELL_NAIVE_61
21.4
B_CELL_NAIVE_62
21.3
B_CELL_NAIVE_63
21.3
B_CELL_NAIVE_64
21.3
B_CELL_NAIVE_65
21.3
B_CELL_NAIVE_66
21.2
B_CELL_NAIVE_67
20.9
B_CELL_NAIVE_68
20.8
B_CELL_NAIVE_69
20.7
B_CELL_NAIVE_70
20.5
B_CELL_NAIVE_71
20.3
B_CELL_NAIVE_72
20.2
B_CELL_NAIVE_73
19.1
B_CELL_NAIVE_74
19.0
B_CELL_NAIVE_75
18.7
B_CELL_NAIVE_76
18.7
B_CELL_NAIVE_77
18.4
B_CELL_NAIVE_78
18.4
B_CELL_NAIVE_79
17.8
B_CELL_NAIVE_80
17.6
B_CELL_NAIVE_81
17.4
B_CELL_NAIVE_82
17.1
B_CELL_NAIVE_83
16.4
B_CELL_NAIVE_84
16.1
B_CELL_NAIVE_85
15.7
B_CELL_NAIVE_86
15.4
B_CELL_NAIVE_87
15.2
B_CELL_NAIVE_88
14.5
B_CELL_NAIVE_89
14.4
B_CELL_NAIVE_90
13.0
B_CELL_NAIVE_91
11.3
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