A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.8
nTPM
Monaco:
26.2
nTPM
Schmiedel:
18.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.8
HPA sample
nTPM
Classical monocyte nTPM: 2.7
Samples: 6
Max nTPM: 5.7
Min nTPM: 1.6
P10809_1003
5.7
P10809_1020
2.6
P10809_1039
2.2
P10809_1058
2.3
P10809_1080
1.8
P10809_1107
1.6
Intermediate monocyte nTPM: 4.7
Samples: 6
Max nTPM: 11.7
Min nTPM: 1.1
P10809_1004
11.7
P10809_1023
3.6
P10809_1042
5.4
P10809_1061
1.1
P10809_1081
2.0
P10809_1108
4.4
Non-classical monocyte nTPM: 9.8
Samples: 5
Max nTPM: 17.6
Min nTPM: 2.3
P10809_1005
17.6
P10809_1053
9.0
P10809_1072
15.2
P10809_1082
2.3
P10809_1109
4.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.2
Monaco sample
nTPM
Classical monocyte nTPM: 15.1
Samples: 4
Max nTPM: 26.9
Min nTPM: 8.1
RHH5313_R3680
17.0
RHH5221_R3593
26.9
RHH5250_R3622
8.1
RHH5279_R3651
8.5
Intermediate monocyte nTPM: 20.3
Samples: 4
Max nTPM: 38.2
Min nTPM: 3.3
RHH5314_R3681
3.3
RHH5222_R3594
38.2
RHH5251_R3623
16.4
RHH5280_R3652
23.3
Non-classical monocyte nTPM: 26.3
Samples: 4
Max nTPM: 43.9
Min nTPM: 2.7
RHH5315_R3682
2.7
RHH5223_R3595
43.9
RHH5252_R3624
20.4
RHH5281_R3653
38.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.1
Schmiedel sample id
TPM
Classical monocyte TPM: 10.2
Samples: 91
Max TPM: 21.6
Min TPM: 3.2
MONOCYTES_1
21.6
MONOCYTES_2
21.6
MONOCYTES_3
17.2
MONOCYTES_4
17.0
MONOCYTES_5
16.8
MONOCYTES_6
16.8
MONOCYTES_7
16.6
MONOCYTES_8
16.0
MONOCYTES_9
15.8
MONOCYTES_10
15.4
MONOCYTES_11
15.3
MONOCYTES_12
15.0
MONOCYTES_13
14.9
MONOCYTES_14
14.9
MONOCYTES_15
14.7
MONOCYTES_16
14.6
MONOCYTES_17
14.4
MONOCYTES_18
14.0
MONOCYTES_19
13.8
MONOCYTES_20
13.8
MONOCYTES_21
13.6
MONOCYTES_22
13.5
MONOCYTES_23
13.4
MONOCYTES_24
13.3
MONOCYTES_25
13.1
MONOCYTES_26
13.0
MONOCYTES_27
13.0
MONOCYTES_28
12.8
MONOCYTES_29
12.6
MONOCYTES_30
12.2
MONOCYTES_31
12.0
MONOCYTES_32
11.8
MONOCYTES_33
11.7
MONOCYTES_34
11.7
MONOCYTES_35
11.6
MONOCYTES_36
11.6
MONOCYTES_37
11.4
MONOCYTES_38
11.2
MONOCYTES_39
11.1
MONOCYTES_40
10.9
MONOCYTES_41
10.7
MONOCYTES_42
10.6
MONOCYTES_43
10.5
MONOCYTES_44
10.4
MONOCYTES_45
10.1
MONOCYTES_46
10.0
MONOCYTES_47
9.9
MONOCYTES_48
9.9
MONOCYTES_49
9.8
MONOCYTES_50
9.5
MONOCYTES_51
9.3
MONOCYTES_52
9.2
MONOCYTES_53
9.1
MONOCYTES_54
8.7
MONOCYTES_55
8.3
MONOCYTES_56
8.1
MONOCYTES_57
7.8
MONOCYTES_58
7.7
MONOCYTES_59
7.7
MONOCYTES_60
7.5
MONOCYTES_61
7.5
MONOCYTES_62
7.5
MONOCYTES_63
7.4
MONOCYTES_64
7.4
MONOCYTES_65
7.4
MONOCYTES_66
7.1
MONOCYTES_67
7.1
MONOCYTES_68
7.0
MONOCYTES_69
6.8
MONOCYTES_70
6.4
MONOCYTES_71
6.4
MONOCYTES_72
6.4
MONOCYTES_73
6.3
MONOCYTES_74
6.2
MONOCYTES_75
6.0
MONOCYTES_76
6.0
MONOCYTES_77
5.9
MONOCYTES_78
5.8
MONOCYTES_79
5.7
MONOCYTES_80
5.6
MONOCYTES_81
5.4
MONOCYTES_82
5.3
MONOCYTES_83
5.0
MONOCYTES_84
4.9
MONOCYTES_85
4.8
MONOCYTES_86
4.8
MONOCYTES_87
4.6
MONOCYTES_88
4.0
MONOCYTES_89
3.9
MONOCYTES_90
3.5
MONOCYTES_91
3.2
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Non-classical monocyte TPM: 18.1
Samples: 90
Max TPM: 44.8
Min TPM: 3.3
M2_1
44.8
M2_2
42.5
M2_3
41.1
M2_4
37.7
M2_5
36.4
M2_6
36.4
M2_7
34.5
M2_8
33.7
M2_9
32.4
M2_10
31.4
M2_11
31.3
M2_12
31.0
M2_13
28.6
M2_14
28.5
M2_15
28.1
M2_16
28.0
M2_17
26.4
M2_18
26.2
M2_19
25.7
M2_20
25.1
M2_21
25.1
M2_22
25.0
M2_23
24.9
M2_24
23.9
M2_25
23.8
M2_26
23.4
M2_27
22.8
M2_28
22.1
M2_29
22.0
M2_30
21.8
M2_31
21.6
M2_32
21.6
M2_33
20.6
M2_34
20.2
M2_35
19.7
M2_36
19.7
M2_37
19.5
M2_38
19.2
M2_39
19.0
M2_40
18.8
M2_41
18.4
M2_42
18.3
M2_43
18.0
M2_44
17.3
M2_45
16.9
M2_46
16.9
M2_47
16.1
M2_48
15.9
M2_49
15.8
M2_50
15.7
M2_51
15.6
M2_52
15.4
M2_53
14.6
M2_54
14.3
M2_55
13.4
M2_56
12.6
M2_57
12.2
M2_58
11.8
M2_59
11.6
M2_60
11.4
M2_61
11.4
M2_62
11.4
M2_63
11.2
M2_64
11.0
M2_65
10.9
M2_66
10.4
M2_67
10.3
M2_68
10.3
M2_69
9.7
M2_70
9.3
M2_71
9.2
M2_72
9.1
M2_73
9.1
M2_74
9.0
M2_75
8.9
M2_76
8.1
M2_77
7.7
M2_78
7.6
M2_79
6.8
M2_80
6.6
M2_81
6.5
M2_82
6.4
M2_83
6.0
M2_84
5.9
M2_85
5.2
M2_86
5.0
M2_87
4.2
M2_88
4.0
M2_89
3.6
M2_90
3.3
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