We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
MICOS13
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • MICOS13
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:205.3 nTPM
HPA Brain:102.0 nTPM
GTEx:205.3 nTPM
FANTOM5:51.7 Scaled Tags Per Million
Pig:24.2 nTPM
Mouse:123.7 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

102.0
Sample id Sample description nTPM
Amygdala
nTPM: 99.5
2814 Male, age 76, right hemisphere 133.9
2695 Female, age 67, right hemisphere 102.2
1987 Female, age 91, left hemisphere 95.6
2517 Female, age 94, left hemisphere 87.8
2514 Male, age 75, right hemisphere 78.1
Basal amygdala
nTPM: 91.9
2243 Female, age 91, right hemisphere 99.4
2609 Male, age 75, right hemisphere 96.5
2685 Female, age 94, left hemisphere 96.4
2110 Male, age 80, left hemisphere 94.3
1955 Male, age 76, both hemispheres 93.6
2827 Female, age 67, right hemisphere 71.0
Central amygdala
nTPM: 102.0
1905 Male, age 76, both hemispheres 128.4
2826 Female, age 94, left hemisphere 105.7
2515 Male, age 75, right hemisphere 95.5
2239 Male, age 80, left hemisphere 93.1
2701 Female, age 91, right hemisphere 87.3
Corticomedial amygdala
nTPM: 88.6
2829 Male, age 80, left hemisphere 106.0
2242 Female, age 91, right hemisphere 97.7
2240 Male, age 76, both hemispheres 88.1
2428 Male, age 75, right hemisphere 86.2
2429 Female, age 94, left hemisphere 84.4
2535 Female, age 67, right hemisphere 69.3
Lateral amygdala
nTPM: 91.4
1883 Male, age 76, both hemispheres 117.5
2516 Male, age 75, right hemisphere 96.0
2534 Female, age 94, left hemisphere 95.0
2255 Female, age 91, right hemisphere 83.2
2830 Female, age 67, right hemisphere 79.0
2256 Male, age 80, left hemisphere 77.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

205.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 205.3
Samples: 181

Max nTPM: 625.2
Min nTPM: 99.2
Std nTPM: 74.3
Median nTPM: 189.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 625.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 578.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 484.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 478.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 446.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 360.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 336.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 326.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 324.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 320.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 319.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 301.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 289.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 286.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 286.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 285.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 283.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 281.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 274.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 273.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 272.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 269.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 266.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 264.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 263.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 261.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 260.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 259.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 258.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 256.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 254.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 254.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 253.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 253.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 253.0
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 248.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 246.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 244.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 237.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 235.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 234.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 233.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 233.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 232.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 231.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 231.0
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 230.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 230.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 227.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 225.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 225.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 225.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 225.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 225.0
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 224.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 221.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 221.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 220.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 219.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 218.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 214.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 213.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 213.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 212.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 212.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 212.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 211.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 210.2
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 207.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 207.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 206.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 206.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 204.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 204.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 203.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 201.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 200.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 199.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 198.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 198.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 196.0
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 194.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 194.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 193.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 193.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 192.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 191.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 191.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 190.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 189.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 189.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 188.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 187.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 186.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 184.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 183.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 183.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 182.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 180.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 180.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 180.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 178.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 178.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 177.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 177.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 177.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 177.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 176.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 175.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 174.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 174.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 174.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 174.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 173.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 173.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 173.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 171.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 171.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 171.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 170.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 170.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 169.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 168.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 168.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 168.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 167.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 167.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 167.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 167.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 166.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 166.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 165.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 165.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 165.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 161.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 161.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 159.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 159.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 158.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 158.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 157.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 155.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 154.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 154.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 152.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 150.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 149.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 149.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 149.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 148.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 148.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 146.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 146.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 145.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 145.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 145.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 144.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 142.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 141.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 141.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 139.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 139.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 138.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 138.6
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 136.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 136.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 133.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 133.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 133.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 131.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 131.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 126.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 124.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 124.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 118.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 116.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 116.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 111.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 111.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 103.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 99.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

51.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 51.7
FF:10151-102I7 76 years, female 51.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

24.2
Pig sample Sample description nTPM
Amygdala
nTPM: 24.2
Samples: 4

Max nTPM: 34.3
Min nTPM: 19.5
Sample A Female 34.3
Sample B Female 20.5
Sample C Male 22.4
Sample D Male 19.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

123.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 123.8
Samples: 4

Max nTPM: 129.0
Min nTPM: 118.2
Sample A Male 123.7
Sample B Male 129.0
Sample C Female 124.1
Sample D Female 118.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.3
68844217 Antisense, RP_050222_01_B06, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo