We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
ASPHD1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • ASPHD1
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:163.2 nTPM
HPA Brain:75.6 nTPM
GTEx:163.2 nTPM
FANTOM5:137.0 Scaled Tags Per Million
Pig:41.5 nTPM
Mouse:44.3 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

75.6
Sample id Sample description nTPM
Amygdala
nTPM: 47.4
2695 Female, age 67, right hemisphere 70.7
2814 Male, age 76, right hemisphere 54.3
2517 Female, age 94, left hemisphere 45.6
1987 Female, age 91, left hemisphere 34.1
2514 Male, age 75, right hemisphere 32.3
Basal amygdala
nTPM: 69.0
2827 Female, age 67, right hemisphere 132.8
2685 Female, age 94, left hemisphere 71.4
2110 Male, age 80, left hemisphere 59.2
1955 Male, age 76, both hemispheres 53.9
2243 Female, age 91, right hemisphere 51.3
2609 Male, age 75, right hemisphere 45.4
Central amygdala
nTPM: 64.4
2826 Female, age 94, left hemisphere 125.7
1905 Male, age 76, both hemispheres 59.8
2515 Male, age 75, right hemisphere 52.8
2239 Male, age 80, left hemisphere 49.9
2701 Female, age 91, right hemisphere 34.0
Corticomedial amygdala
nTPM: 51.5
2535 Female, age 67, right hemisphere 81.8
2829 Male, age 80, left hemisphere 56.0
2429 Female, age 94, left hemisphere 50.6
2242 Female, age 91, right hemisphere 45.2
2240 Male, age 76, both hemispheres 39.6
2428 Male, age 75, right hemisphere 36.0
Lateral amygdala
nTPM: 75.6
2830 Female, age 67, right hemisphere 152.3
2534 Female, age 94, left hemisphere 90.0
2256 Male, age 80, left hemisphere 59.3
2516 Male, age 75, right hemisphere 55.2
1883 Male, age 76, both hemispheres 51.4
2255 Female, age 91, right hemisphere 45.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

163.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 163.2
Samples: 181

Max nTPM: 435.3
Min nTPM: 59.7
Std nTPM: 63.8
Median nTPM: 149.0
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 435.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 392.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 341.5
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 326.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 318.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 316.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 300.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 293.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 292.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 291.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 288.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 274.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 274.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 269.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 261.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 258.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 256.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 254.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 252.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 248.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 241.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 238.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 233.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 232.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 226.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 226.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 225.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 221.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 220.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 217.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 216.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 214.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 212.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 210.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 208.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 206.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 205.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 203.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 202.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 202.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 201.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 201.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 200.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 197.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 195.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 192.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 192.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 191.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 190.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 189.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 189.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 185.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 185.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 183.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 183.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 183.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 179.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 179.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 178.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 178.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 177.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 177.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 174.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 172.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 171.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 171.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 170.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 170.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 169.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 169.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 167.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 166.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 165.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 163.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 163.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 162.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 162.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 161.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 160.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 159.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 158.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 158.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 157.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 154.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 153.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 153.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 153.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 153.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 152.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 151.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 149.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 148.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 148.2
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 147.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 147.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 146.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 145.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 145.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 143.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 143.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 143.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 143.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 142.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 141.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 139.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 138.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 138.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 136.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 136.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 135.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 135.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 135.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 135.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 134.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 134.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 133.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 133.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 133.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 132.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 131.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 131.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 130.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 129.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 129.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 127.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 127.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 127.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 126.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 125.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 123.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 123.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 123.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 123.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 123.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 122.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 121.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 120.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 120.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 119.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 117.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 116.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 116.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 114.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 114.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 113.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 113.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 111.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 110.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 110.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 109.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 108.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 106.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 104.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 103.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 103.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 101.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 101.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 99.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 97.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 96.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 95.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 95.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 92.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 91.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 90.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 89.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 88.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 86.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 86.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 85.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 84.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 83.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 79.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 77.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 75.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 75.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 74.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 67.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 66.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 61.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 59.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

137.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 137.0
FF:10151-102I7 76 years, female 137.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

41.5
Pig sample Sample description nTPM
Amygdala
nTPM: 41.5
Samples: 4

Max nTPM: 54.1
Min nTPM: 34.1
Sample A Female 54.1
Sample B Female 34.1
Sample C Male 40.7
Sample D Male 37.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

44.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 44.3
Samples: 4

Max nTPM: 47.9
Min nTPM: 40.9
Sample A Male 40.9
Sample B Male 47.9
Sample C Female 46.2
Sample D Female 42.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
69449026 Antisense, RP_050419_03_B04, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo