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ASPHD1
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • ASPHD1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:138.9 nTPM
FANTOM5:129.8 Scaled Tags Per Million
Pig:88.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA045175
Glial cells Low
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

138.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 138.9
Samples: 300

Max nTPM: 368.5
Min nTPM: 24.5
Std nTPM: 55.5
Median nTPM: 131.8
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 368.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 345.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 290.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 286.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 273.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 271.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 257.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 255.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 254.1
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 250.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 248.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 246.7
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 246.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 245.8
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 244.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 243.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 237.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 237.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 229.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 229.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 228.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 225.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 220.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 219.9
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 217.8
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 216.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 216.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 212.9
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 212.3
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 212.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 211.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 210.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 208.4
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 205.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 204.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 204.3
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 204.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 203.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 201.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 200.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 200.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 198.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 197.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 196.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 196.7
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 196.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 195.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 194.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 194.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 192.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 190.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 190.0
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 189.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 188.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 187.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 187.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 187.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 186.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 186.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 186.6
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 186.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 183.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 182.9
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 182.9
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 182.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 181.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 180.0
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 179.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 179.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 178.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 177.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 176.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 176.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 175.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 174.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 171.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 171.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 169.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 168.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 167.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 166.9
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 166.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 166.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 166.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 166.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 165.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 164.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 164.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 164.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 164.3
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 164.1
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 164.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 162.9
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 162.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 161.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 160.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 160.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 160.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 159.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 157.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 157.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 156.8
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 156.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 155.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 155.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 153.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 152.6
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 152.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 152.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 151.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 151.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 150.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 149.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 149.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 149.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 148.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 148.5
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 148.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 147.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 147.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 147.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 147.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 145.3
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 142.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 142.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 142.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 142.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 142.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 141.3
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 141.3
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 139.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 138.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 138.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 137.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 136.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 136.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 135.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 135.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 135.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 135.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 134.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 134.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 134.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 133.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 133.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 133.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 133.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 132.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 132.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 132.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 131.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 131.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 130.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 130.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 130.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 129.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 129.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 129.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 128.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 128.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 128.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 127.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 127.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 127.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 126.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 125.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 125.7
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 125.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 125.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 124.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 124.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 124.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 122.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 121.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 121.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 121.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 121.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 121.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 121.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 120.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 120.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 119.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 119.7
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 119.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 119.5
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 119.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 119.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 118.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 118.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 118.0
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 116.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 116.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 116.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 114.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 114.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 114.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 114.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 113.6
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 113.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 111.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 111.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 111.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 111.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 109.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 109.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 108.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 108.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 107.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 107.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 106.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 106.3
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 106.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 105.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 105.2
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 105.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 104.9
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 104.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 103.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 102.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 101.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 100.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 99.8
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 98.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 98.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 97.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 96.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 96.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 96.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 95.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 95.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 95.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 94.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 94.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 94.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 94.0
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 94.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 93.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 93.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 93.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 93.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 92.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 92.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 91.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 91.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 90.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 89.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 88.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 88.1
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 87.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 87.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 86.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 86.4
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 83.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 82.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 82.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 81.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 81.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 81.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 80.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 80.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 78.6
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 78.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 77.8
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 77.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 77.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 76.7
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 76.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 75.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 75.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 74.5
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 73.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 73.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 72.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 71.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 71.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 70.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 70.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 69.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 69.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 66.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 65.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 65.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 64.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 63.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 59.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 55.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 51.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 50.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 49.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 49.7
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 48.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 48.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 47.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 45.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 43.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 43.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 28.1
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 27.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 27.1
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 24.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

129.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 129.8
FF:10164-103B2 76 years, female 129.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

88.3
Pig sample Sample description nTPM
Caudate
nTPM: 88.4
Samples: 4

Max nTPM: 114.4
Min nTPM: 67.9
Sample A Female 67.9
Sample B Female 80.5
Sample C Male 114.4
Sample D Male 90.6

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