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MARCKSL1
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  • MARCKSL1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1097.7 nTPM
HPA Brain:617.0 nTPM
GTEx:1097.7 nTPM
FANTOM5:656.5 Scaled Tags Per Million
Pig:1971.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

617.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 554.7
1981 Female, age 72, midline 641.0
2816 Male, age 47, midline 607.1
2194 Female, age 79, both hemispheres 568.2
2565 Male, age 75, midline 482.0
2048 Male, age 55, midline 475.5
Cervical spinal cord, dorsal horn
nTPM: 603.1
2296 Male, age 66, both hemispheres 1070.4
2173 Female, age 72, unknown 885.1
2069 Male, age 47, both hemispheres 522.5
1877 Male, age 55, unknown 495.5
2721 Male, age 90, both hemispheres 362.1
2297 Male, age 75, both hemispheres 282.8
Cervical spinal cord, ventral horn
nTPM: 617.0
2068 Male, age 55, unknown 690.1
2820 Female, age 79, both hemispheres 674.4
2098 Female, age 72, unknown 639.0
2295 Male, age 66, both hemispheres 607.9
2809 Male, age 90, both hemispheres 548.4
2480 Male, age 75, both hemispheres 542.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1097.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1097.7
Samples: 204

Max nTPM: 2195.3
Min nTPM: 190.7
Std nTPM: 425.4
Median nTPM: 1085.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 2195.3
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 2192.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 2138.6
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 2031.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 2005.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1987.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1956.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1874.0
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 1843.7
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 1830.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1827.9
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 1821.7
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 1758.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1754.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1751.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1724.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1717.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1681.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1676.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1659.8
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 1658.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1650.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1632.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1612.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1610.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1600.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1584.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1565.0
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 1564.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1530.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1528.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1509.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1509.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1506.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1488.3
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 1469.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1462.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 1460.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1460.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 1450.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 1445.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1441.5
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 1439.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1435.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1430.8
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 1422.7
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 1407.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1401.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1394.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1391.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1391.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1390.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1383.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1381.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1380.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1374.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1370.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 1369.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1367.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1362.9
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 1360.2
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 1358.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1358.0
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 1355.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1339.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1323.6
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 1322.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1319.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1316.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 1311.6
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 1303.7
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 1296.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1295.4
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 1280.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1276.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1263.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 1244.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 1238.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1217.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 1211.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 1195.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 1195.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1183.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1178.0
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 1175.9
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 1173.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1172.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1160.5
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 1158.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1158.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1157.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1154.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1154.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1130.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1119.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1103.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 1100.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 1094.2
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 1092.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 1090.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1090.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1087.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1083.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 1081.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1081.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 1077.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1067.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 1064.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1047.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1042.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1039.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1033.1
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 1028.6
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 1028.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1025.9
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 1019.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1010.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1010.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 988.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 985.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 980.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 965.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 955.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 950.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 946.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 941.2
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 939.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 929.5
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 924.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 920.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 915.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 906.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 897.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 896.8
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 895.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 889.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 875.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 871.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 870.2
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 866.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 861.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 858.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 837.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 835.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 832.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 821.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 815.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 810.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 807.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 807.3
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 801.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 798.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 795.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 787.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 783.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 775.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 768.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 768.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 766.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 763.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 754.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 751.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 746.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 742.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 734.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 722.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 712.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 701.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 674.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 666.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 662.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 653.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 637.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 636.1
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 622.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 614.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 597.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 591.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 563.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 559.2
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 558.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 545.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 533.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 525.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 510.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 509.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 496.5
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 488.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 477.5
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 474.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 457.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 454.2
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 434.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 424.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 414.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 406.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 400.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 398.6
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 355.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 289.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 285.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 238.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 196.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 190.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

656.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 656.5
FF:10181-103D1 60 years, female 940.6
FF:10159-103A6 76 years, female 372.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1971.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 1456.8
Samples: 4

Max nTPM: 1551.6
Min nTPM: 1345.8
Sample A Female 1345.8
Sample B Female 1519.4
Sample C Male 1410.3
Sample D Male 1551.6
Ventral spinal cord
nTPM: 1971.6
Samples: 4

Max nTPM: 2705.0
Min nTPM: 1577.6
Sample A Female 1747.2
Sample B Female 1856.5
Sample C Male 1577.6
Sample D Male 2705.0

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