BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:535.3 nTPM
HPA Brain:683.9 nTPM
GTEx:535.3 nTPM
FANTOM5:737.7 Scaled Tags Per Million
Macaque:192.7 nTPM
Mouse:91.6 nTPM
Rat:0.2 nTPM
Pig:644.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 683.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 538.9
2411 Female, age 72, unknown 685.0
1833 Male, age 53, unknown 661.5
1870 Female, age 42, unknown 660.2
1830 Male, age 51, unknown 651.7
2828 Female, age 72, unknown 589.7
2019 Male, age 18, unknown 540.8
1827 Male, age 72, unknown 425.6
2586 Male, age 75, left hemisphere 421.7
2666 Male, age 74, left hemisphere 381.5
2219 Male, age 76, both hemispheres 371.1
Dorsal raphe nucleus
nTPM: 415.8
2750 Male, age 76, both hemispheres 691.6
2016 Female, age 72, unknown 424.3
1828 Male, age 53, unknown 397.6
2298 Female, age 72, unknown 293.3
2047 Male, age 72, unknown 272.0
Inferior colliculus
nTPM: 389.5
2849 Male, age 72, unknown 435.8
1848 Female, age 42, unknown 413.6
1890 Male, age 53, unknown 385.7
2097 Female, age 72, unknown 322.8
Median raphe nucleus
nTPM: 416.9
2220 Male, age 76, midline 416.9
Periaquaductal grey, anterior
nTPM: 313.9
2502 Female, age 75, unknown 377.8
1947 Male, age 18, unknown 288.3
1795 Male, age 51, unknown 275.5
Periaquaductal grey, dorsal
nTPM: 323.2
2464 Female, age 72, unknown 413.9
1831 Male, age 72, unknown 349.5
2850 Male, age 76, both hemispheres 282.3
1840 Male, age 53, unknown 247.2
Periaquaductal grey, lateral
nTPM: 319.5
2053 Male, age 18, unknown 375.5
2272 Male, age 74, both hemispheres 331.9
2140 Male, age 76, both hemispheres 251.1
Pretectal area
nTPM: 385.0
2667 Female, age 75, unknown 534.5
1815 Male, age 53, unknown 485.1
2316 Male, age 76, right hemisphere 433.4
2407 Male, age 75, both hemispheres 414.2
2825 Male, age 18, unknown 409.2
1817 Female, age 42, unknown 401.2
2273 Male, age 74, both hemispheres 350.5
2224 Female, age 72, unknown 336.2
2007 Male, age 72, unknown 333.8
1944 Female, age 72, unknown 284.3
1816 Male, age 51, unknown 253.0
Red nucleus
nTPM: 683.9
2823 Male, age 76, right hemisphere 842.0
2769 Male, age 72, unknown 826.2
2227 Male, age 72, unknown 781.3
1865 Male, age 51, unknown 776.7
1821 Female, age 72, unknown 765.1
1904 Male, age 53, unknown 758.9
1954 Female, age 42, unknown 667.8
2503 Female, age 72, unknown 658.9
2785 Male, age 18, unknown 643.8
2588 Male, age 74, left hemisphere 567.4
2584 Male, age 75, left hemisphere 499.2
2725 Female, age 75, unknown 419.9
Substantia nigra
nTPM: 393.2
2699 Male, age 18, unknown 506.4
2583 Male, age 75, right hemisphere 498.1
1851 Male, age 51, unknown 472.6
1889 Female, age 72, unknown 430.9
2409 Female, age 72, unknown 361.8
1941 Male, age 53, unknown 353.9
1916 Female, age 42, unknown 345.7
2590 Female, age 75, unknown 344.6
2665 Male, age 74, both hemispheres 316.1
2241 Male, age 72, unknown 301.8
Superior colliculus
nTPM: 449.2
1913 Female, age 42, unknown 647.4
1995 Male, age 72, unknown 625.2
2587 Male, age 74, left hemisphere 499.5
1839 Male, age 51, unknown 480.6
1895 Male, age 76, right hemisphere 470.5
2668 Female, age 75, unknown 450.6
1796 Male, age 53, unknown 389.6
2664 Male, age 75, both hemispheres 343.4
2087 Female, age 72, unknown 306.6
2261 Male, age 18, unknown 278.6
Ventral tegmental area
nTPM: 493.5
2223 Female, age 72, unknown 796.3
2410 Female, age 72, unknown 521.0
2218 Male, age 76, both hemispheres 437.6
1942 Male, age 51, unknown 410.9
2021 Male, age 53, unknown 400.9
1915 Female, age 42, unknown 394.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 535.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 535.3
Samples: 183

Max nTPM: 1596.5
Min nTPM: 141.9
Std nTPM: 233.5
Median nTPM: 502.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 1596.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1311.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1286.9
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 1149.2
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 1134.5
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 1068.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1056.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 992.1
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 964.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 957.3
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 935.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 737.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 737.7
FF:10158-103A5 76 years, female 737.7

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 192.7
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 174.8
Samples: 1

Max nTPM: 174.8
Min nTPM: 174.8
Sample A 174.8
Midbrain
nTPM: 127.6
Samples: 1

Max nTPM: 127.6
Min nTPM: 127.6
Sample A 127.6
Superior colliculi
nTPM: 192.7
Samples: 1

Max nTPM: 192.7
Min nTPM: 192.7
Sample A 192.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 644.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 553.9
Samples: 3

Max nTPM: 800.8
Min nTPM: 351.3
Sample A Female 800.8
Sample B Female 351.3
Sample C Male 509.6
Midbrain
nTPM: 477.7
Samples: 3

Max nTPM: 660.5
Min nTPM: 376.7
Sample B Female 660.5
Sample C Male 396.0
Sample D Male 376.7
Periaqueductal gray
nTPM: 450.9
Samples: 3

Max nTPM: 507.7
Min nTPM: 365.7
Sample B Female 507.7
Sample C Male 365.7
Sample D Male 479.2
Superior colliculi
nTPM: 644.5
Samples: 4

Max nTPM: 806.7
Min nTPM: 365.6
Sample A Female 771.3
Sample B Female 365.6
Sample C Male 634.4
Sample D Male 806.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 91.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 91.7
Samples: 4

Max nTPM: 95.1
Min nTPM: 87.0
Sample A 87.0
Sample B 89.5
Sample C 95.0
Sample D 95.1

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 0.2
Rat sample Sample description nTPM
Midbrain
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.1
Sample A 0.3
Sample A 0.2
Sample A 0.1
Sample A 0.3

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