HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:33.9 nTPM
HPA Brain:15.9 nTPM
GTEx:33.9 nTPM
FANTOM5:10.9 Scaled Tags Per Million
Pig:83.1 nTPM
Mouse:7.1 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA045617
Glial cells Low
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 15.9
Sample id Sample description nTPM
Hippocampus
nTPM: 12.7
2529 Female, age 94, left hemisphere 14.7
1911 Female, age 85, right hemisphere 13.7
1855 Male, age 76, left hemisphere 13.5
2621 Female, age 67, right hemisphere 12.9
1898 Male, age 80, left hemisphere 11.3
2148 Female, age 91, left hemisphere 10.2
Dentate gyrus
nTPM: 12.1
2010 Male, age 76, both hemispheres 20.8
2530 Female, age 94, left hemisphere 16.7
2528 Male, age 74, both hemispheres 11.9
2246 Female, age 85, both hemispheres 10.8
2531 Female, age 67, both hemispheres 7.1
1927 Female, age 91, both hemispheres 5.4
Entorhinal gyrus
nTPM: 10.2
2764 Male, age 80, right hemisphere 12.9
1938 Female, age 85, left hemisphere 10.5
1787 Male, age 76, left hemisphere 10.1
2117 Female, age 91, right hemisphere 9.9
2686 Male, age 75, right hemisphere 9.6
2613 Female, age 94, left hemisphere 7.9
Hippocampus, CA1
nTPM: 12.2
2082 Female, age 91, right hemisphere 20.5
1873 Female, age 85, both hemispheres 11.9
2045 Male, age 76, both hemispheres 11.5
2527 Male, age 74, both hemispheres 9.8
2749 Male, age 80, left hemisphere 7.3
Hippocampus, CA2
nTPM: 15.9
2249 Male, age 74, both hemispheres 30.8
1940 Female, age 85, left hemisphere 21.7
2113 Female, age 91, right hemisphere 14.5
2437 Female, age 94, left hemisphere 13.5
1963 Male, age 80, left hemisphere 7.8
1892 Male, age 76, both hemispheres 7.2
Hippocampus, CA3
nTPM: 11.3
2436 Male, age 74, both hemispheres 15.0
1891 Female, age 85, both hemispheres 13.2
1867 Male, age 76, both hemispheres 12.0
2620 Female, age 94, left hemisphere 10.3
2861 Female, age 67, both hemispheres 9.9
2137 Male, age 80, left hemisphere 7.3
Parahippocampal cortex
nTPM: 10.2
2018 Male, age 76, both hemispheres 13.5
2532 Female, age 72, left hemisphere 13.3
1850 Male, age 80, both hemispheres 10.8
1990 Female, age 91, right hemisphere 10.8
2692 Male, age 74, both hemispheres 10.6
2622 Female, age 67, right hemisphere 10.3
1933 Female, age 85, both hemispheres 9.1
2250 Female, age 67, right hemisphere 8.5
2693 Female, age 94, both hemispheres 7.9
2245 Female, age 91, both hemispheres 7.6
Perirhinal gyrus
nTPM: 9.0
2848 Male, age 76, right hemisphere 10.2
1794 Male, age 80, right hemisphere 8.8
1841 Female, age 85, right hemisphere 8.8
2521 Female, age 94, right hemisphere 8.8
1847 Female, age 91, left hemisphere 8.3
Subiculum
nTPM: 13.6
2042 Male, age 76, both hemispheres 20.3
1901 Male, age 80, both hemispheres 14.6
1977 Female, age 85, both hemispheres 13.2
2438 Female, age 94, left hemisphere 12.4
2619 Male, age 74, both hemispheres 10.8
2729 Female, age 91, right hemisphere 10.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 33.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 33.9
Samples: 255

Max nTPM: 116.2
Min nTPM: 5.2
Std nTPM: 16.6
Median nTPM: 30.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 116.2
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 96.7
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 90.2
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 85.1
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 77.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 76.8
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 73.3
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 72.7
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 71.5
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 70.8
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 67.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 10.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 10.9
FF:10153-102I9 76 years, female 11.5
FF:10169-103B7 60 years, female 10.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 83.1
Pig sample Sample description nTPM
Subiculum
nTPM: 45.0
Samples: 4

Max nTPM: 50.8
Min nTPM: 41.1
Sample A Female 50.8
Sample B Female 41.1
Sample C Male 41.9
Sample D Male 46.2
Dorsal hippocampus
nTPM: 83.1
Samples: 4

Max nTPM: 98.9
Min nTPM: 60.4
Sample A Female 92.9
Sample B Female 80.1
Sample C Male 60.4
Sample D Male 98.9
Entorhinal cortex
nTPM: 43.2
Samples: 4

Max nTPM: 47.7
Min nTPM: 36.5
Sample A Female 47.7
Sample B Female 40.9
Sample C Male 47.7
Sample D Male 36.5
Ventral hippocampus
nTPM: 67.2
Samples: 4

Max nTPM: 83.0
Min nTPM: 49.9
Sample A Female 67.3
Sample B Female 49.9
Sample C Male 68.4
Sample D Male 83.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 7.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 3.1
Samples: 4

Max nTPM: 3.7
Min nTPM: 2.5
Sample A Male 2.5
Sample B Male 2.8
Sample C Female 3.7
Sample D Female 3.4
Hippocampal formation
nTPM: 7.1
Samples: 4

Max nTPM: 9.1
Min nTPM: 5.6
Sample A Male 7.2
Sample B Male 6.4
Sample C Female 5.6
Sample D Female 9.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.1
73513654 Antisense, RP_051121_02_E01, Mouse strain C57BL/6J (56 days, male) 0.1

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