MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.4 nTPM
HPA Brain:26.9 nTPM
GTEx:33.4 nTPM
FANTOM5:9.8 Scaled Tags Per Million
Pig:69.3 nTPM
Mouse:5.0 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 26.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.5
2019 Male, age 18, unknown 24.6
1827 Male, age 72, unknown 16.7
2666 Male, age 74, left hemisphere 15.6
2828 Female, age 72, unknown 11.8
1833 Male, age 53, unknown 11.7
2411 Female, age 72, unknown 11.4
1870 Female, age 42, unknown 10.5
1830 Male, age 51, unknown 8.4
2586 Male, age 75, left hemisphere 7.6
2219 Male, age 76, both hemispheres 6.7
Dorsal raphe nucleus
nTPM: 17.9
2298 Female, age 72, unknown 36.9
2016 Female, age 72, unknown 19.0
1828 Male, age 53, unknown 16.9
2047 Male, age 72, unknown 8.6
2750 Male, age 76, both hemispheres 8.3
Inferior colliculus
nTPM: 11.1
2097 Female, age 72, unknown 13.0
1890 Male, age 53, unknown 12.9
1848 Female, age 42, unknown 10.7
2849 Male, age 72, unknown 8.0
Median raphe nucleus
nTPM: 11.3
2220 Male, age 76, midline 11.3
Periaquaductal grey, anterior
nTPM: 18.6
1795 Male, age 51, unknown 25.8
2502 Female, age 75, unknown 20.9
1947 Male, age 18, unknown 8.9
Periaquaductal grey, dorsal
nTPM: 21.1
2850 Male, age 76, both hemispheres 31.7
1831 Male, age 72, unknown 24.8
2464 Female, age 72, unknown 15.8
1840 Male, age 53, unknown 12.1
Periaquaductal grey, lateral
nTPM: 26.5
2272 Male, age 74, both hemispheres 33.6
2140 Male, age 76, both hemispheres 25.3
2053 Male, age 18, unknown 20.4
Pretectal area
nTPM: 26.9
2273 Male, age 74, both hemispheres 56.5
1816 Male, age 51, unknown 46.1
1944 Female, age 72, unknown 38.1
2007 Male, age 72, unknown 30.3
1815 Male, age 53, unknown 25.1
1817 Female, age 42, unknown 24.8
2224 Female, age 72, unknown 20.5
2667 Female, age 75, unknown 17.8
2407 Male, age 75, both hemispheres 15.2
2825 Male, age 18, unknown 11.2
2316 Male, age 76, right hemisphere 10.6
Red nucleus
nTPM: 12.0
2785 Male, age 18, unknown 24.8
2588 Male, age 74, left hemisphere 16.9
2725 Female, age 75, unknown 13.4
1821 Female, age 72, unknown 12.1
2503 Female, age 72, unknown 12.0
1904 Male, age 53, unknown 11.1
1954 Female, age 42, unknown 10.8
1865 Male, age 51, unknown 10.3
2823 Male, age 76, right hemisphere 9.9
2769 Male, age 72, unknown 8.2
2227 Male, age 72, unknown 7.7
2584 Male, age 75, left hemisphere 7.3
Substantia nigra
nTPM: 13.2
1889 Female, age 72, unknown 22.8
2241 Male, age 72, unknown 18.0
1851 Male, age 51, unknown 14.2
1916 Female, age 42, unknown 13.6
2409 Female, age 72, unknown 12.7
2665 Male, age 74, both hemispheres 12.5
1941 Male, age 53, unknown 11.6
2590 Female, age 75, unknown 11.5
2699 Male, age 18, unknown 8.5
2583 Male, age 75, right hemisphere 6.3
Superior colliculus
nTPM: 20.3
2087 Female, age 72, unknown 32.4
2261 Male, age 18, unknown 29.8
1995 Male, age 72, unknown 26.8
2587 Male, age 74, left hemisphere 25.1
1913 Female, age 42, unknown 19.3
2668 Female, age 75, unknown 18.8
2664 Male, age 75, both hemispheres 16.9
1796 Male, age 53, unknown 16.8
1839 Male, age 51, unknown 9.7
1895 Male, age 76, right hemisphere 7.8
Ventral tegmental area
nTPM: 11.7
2021 Male, age 53, unknown 17.0
2223 Female, age 72, unknown 12.2
2410 Female, age 72, unknown 11.8
2218 Male, age 76, both hemispheres 9.9
1942 Male, age 51, unknown 9.7
1915 Female, age 42, unknown 9.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 33.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.4
Samples: 183

Max nTPM: 106.0
Min nTPM: 8.5
Std nTPM: 16.0
Median nTPM: 29.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 106.0
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 90.6
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 87.9
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 82.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 75.1
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 72.2
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 72.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 65.8
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 65.2
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 64.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 61.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 9.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.8
FF:10158-103A5 76 years, female 9.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 69.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 64.6
Samples: 4

Max nTPM: 81.3
Min nTPM: 43.8
Sample A Female 81.3
Sample B Female 69.5
Sample C Male 63.7
Sample D Male 43.8
Midbrain
nTPM: 62.3
Samples: 4

Max nTPM: 137.9
Min nTPM: 31.8
Sample A Female 137.9
Sample B Female 41.5
Sample C Male 37.9
Sample D Male 31.8
Periaqueductal gray
nTPM: 69.3
Samples: 3

Max nTPM: 79.7
Min nTPM: 54.8
Sample B Female 54.8
Sample C Male 79.7
Sample D Male 73.5
Superior colliculi
nTPM: 47.2
Samples: 4

Max nTPM: 52.8
Min nTPM: 41.1
Sample A Female 47.8
Sample B Female 52.8
Sample C Male 47.2
Sample D Male 41.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 5.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.0
Samples: 4

Max nTPM: 6.3
Min nTPM: 3.9
Sample A Male 4.7
Sample B Male 5.0
Sample C Female 3.9
Sample D Female 6.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
73513654 Antisense, RP_051121_02_E01, Mouse strain C57BL/6J (56 days, male) 0.1

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