HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:67.7 nTPM
HPA Brain:242.5 nTPM
GTEx:67.7 nTPM
FANTOM5:84.8 Scaled Tags Per Million
Pig:66.1 nTPM
Mouse:109.7 nTPM
Allen mouse:11.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA023310Antibody HPA027421
Glial cells MediumMedium
Neuronal cells MediumHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 242.5
Sample id Sample description nTPM
Hippocampus
nTPM: 156.6
1898 Male, age 80, left hemisphere 193.6
2148 Female, age 91, left hemisphere 192.0
1911 Female, age 85, right hemisphere 168.0
2621 Female, age 67, right hemisphere 158.4
1855 Male, age 76, left hemisphere 115.5
2529 Female, age 94, left hemisphere 112.3
Dentate gyrus
nTPM: 172.0
2531 Female, age 67, both hemispheres 244.1
1927 Female, age 91, both hemispheres 239.8
2246 Female, age 85, both hemispheres 187.3
2010 Male, age 76, both hemispheres 136.2
2528 Male, age 74, both hemispheres 120.4
2530 Female, age 94, left hemisphere 104.2
Entorhinal gyrus
nTPM: 179.4
2764 Male, age 80, right hemisphere 236.0
2613 Female, age 94, left hemisphere 200.6
1938 Female, age 85, left hemisphere 197.4
2686 Male, age 75, right hemisphere 184.2
1787 Male, age 76, left hemisphere 140.4
2117 Female, age 91, right hemisphere 117.6
Hippocampus, CA1
nTPM: 214.3
2749 Male, age 80, left hemisphere 390.3
2082 Female, age 91, right hemisphere 202.4
2045 Male, age 76, both hemispheres 170.0
1873 Female, age 85, both hemispheres 163.4
2527 Male, age 74, both hemispheres 145.1
Hippocampus, CA2
nTPM: 149.8
2113 Female, age 91, right hemisphere 172.5
1940 Female, age 85, left hemisphere 169.0
1892 Male, age 76, both hemispheres 165.7
1963 Male, age 80, left hemisphere 165.7
2249 Male, age 74, both hemispheres 123.5
2437 Female, age 94, left hemisphere 102.2
Hippocampus, CA3
nTPM: 242.5
2137 Male, age 80, left hemisphere 389.2
2620 Female, age 94, left hemisphere 386.5
2861 Female, age 67, both hemispheres 217.7
1867 Male, age 76, both hemispheres 167.6
2436 Male, age 74, both hemispheres 154.3
1891 Female, age 85, both hemispheres 140.1
Parahippocampal cortex
nTPM: 172.6
2245 Female, age 91, both hemispheres 220.5
1850 Male, age 80, both hemispheres 200.5
1990 Female, age 91, right hemisphere 186.8
2693 Female, age 94, both hemispheres 186.1
2622 Female, age 67, right hemisphere 179.2
1933 Female, age 85, both hemispheres 173.9
2532 Female, age 72, left hemisphere 166.0
2250 Female, age 67, right hemisphere 151.3
2692 Male, age 74, both hemispheres 136.9
2018 Male, age 76, both hemispheres 125.1
Perirhinal gyrus
nTPM: 202.9
1847 Female, age 91, left hemisphere 255.0
1794 Male, age 80, right hemisphere 225.3
1841 Female, age 85, right hemisphere 204.2
2521 Female, age 94, right hemisphere 174.6
2848 Male, age 76, right hemisphere 155.2
Subiculum
nTPM: 150.6
1901 Male, age 80, both hemispheres 227.0
1977 Female, age 85, both hemispheres 180.8
2042 Male, age 76, both hemispheres 145.7
2729 Female, age 91, right hemisphere 145.1
2619 Male, age 74, both hemispheres 112.5
2438 Female, age 94, left hemisphere 92.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 67.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 67.7
Samples: 255

Max nTPM: 190.1
Min nTPM: 9.2
Std nTPM: 31.2
Median nTPM: 67.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 190.1
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 164.1
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 152.9
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 141.6
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 135.1
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 133.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 130.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 128.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 125.7
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 125.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 124.8
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 84.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 84.8
FF:10169-103B7 60 years, female 96.5
FF:10153-102I9 76 years, female 73.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 66.1
Pig sample Sample description nTPM
Subiculum
nTPM: 50.2
Samples: 4

Max nTPM: 69.1
Min nTPM: 40.3
Sample A Female 69.1
Sample B Female 45.6
Sample C Male 45.6
Sample D Male 40.3
Dorsal hippocampus
nTPM: 60.8
Samples: 4

Max nTPM: 74.7
Min nTPM: 45.6
Sample A Female 74.7
Sample B Female 70.0
Sample C Male 45.6
Sample D Male 52.9
Entorhinal cortex
nTPM: 66.2
Samples: 4

Max nTPM: 78.0
Min nTPM: 54.8
Sample A Female 78.0
Sample B Female 54.8
Sample C Male 67.1
Sample D Male 64.7
Ventral hippocampus
nTPM: 48.6
Samples: 4

Max nTPM: 84.3
Min nTPM: 32.6
Sample A Female 32.6
Sample B Female 33.9
Sample C Male 43.5
Sample D Male 84.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 109.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 99.7
Samples: 4

Max nTPM: 113.3
Min nTPM: 88.6
Sample A Male 88.6
Sample B Male 96.7
Sample C Female 100.3
Sample D Female 113.3
Hippocampal formation
nTPM: 109.7
Samples: 4

Max nTPM: 115.0
Min nTPM: 99.2
Sample A Male 99.2
Sample B Male 115.0
Sample C Female 111.0
Sample D Female 113.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 11.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.5
69528070 Antisense, RP_050421_03_A08, Mouse strain C57BL/6J (56 days, male) 13.2
73520966 Antisense, RP_051017_04_E06, Mouse strain C57BL/6J (56 days, male) 9.8

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo