MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.1 nTPM
HPA Brain:75.6 nTPM
GTEx:17.1 nTPM
FANTOM5:27.8 Scaled Tags Per Million
Pig:18.4 nTPM
Mouse:15.3 nTPM
Allen mouse:1.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 75.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.5
2586 Male, age 75, left hemisphere 60.3
2219 Male, age 76, both hemispheres 53.9
1870 Female, age 42, unknown 50.4
1830 Male, age 51, unknown 46.3
2666 Male, age 74, left hemisphere 43.7
1827 Male, age 72, unknown 43.1
1833 Male, age 53, unknown 39.3
2828 Female, age 72, unknown 34.8
2411 Female, age 72, unknown 32.5
2019 Male, age 18, unknown 20.8
Dorsal raphe nucleus
nTPM: 51.2
2047 Male, age 72, unknown 69.8
2016 Female, age 72, unknown 59.5
2298 Female, age 72, unknown 52.0
1828 Male, age 53, unknown 42.0
2750 Male, age 76, both hemispheres 32.9
Inferior colliculus
nTPM: 59.8
2849 Male, age 72, unknown 81.7
1848 Female, age 42, unknown 65.1
1890 Male, age 53, unknown 49.5
2097 Female, age 72, unknown 42.8
Median raphe nucleus
nTPM: 53.2
2220 Male, age 76, midline 53.2
Periaquaductal grey, anterior
nTPM: 61.0
1795 Male, age 51, unknown 65.7
1947 Male, age 18, unknown 64.8
2502 Female, age 75, unknown 52.5
Periaquaductal grey, dorsal
nTPM: 64.4
1840 Male, age 53, unknown 88.5
2850 Male, age 76, both hemispheres 75.4
1831 Male, age 72, unknown 51.4
2464 Female, age 72, unknown 42.2
Periaquaductal grey, lateral
nTPM: 75.6
2140 Male, age 76, both hemispheres 93.5
2053 Male, age 18, unknown 70.7
2272 Male, age 74, both hemispheres 62.7
Pretectal area
nTPM: 50.2
2825 Male, age 18, unknown 91.4
2667 Female, age 75, unknown 73.2
2316 Male, age 76, right hemisphere 69.6
2224 Female, age 72, unknown 62.7
2407 Male, age 75, both hemispheres 62.3
2273 Male, age 74, both hemispheres 62.2
1816 Male, age 51, unknown 30.1
1944 Female, age 72, unknown 29.4
1815 Male, age 53, unknown 24.3
1817 Female, age 42, unknown 23.6
2007 Male, age 72, unknown 22.9
Red nucleus
nTPM: 39.6
2584 Male, age 75, left hemisphere 45.8
2588 Male, age 74, left hemisphere 45.4
2769 Male, age 72, unknown 45.1
1954 Female, age 42, unknown 44.8
2227 Male, age 72, unknown 44.5
1904 Male, age 53, unknown 41.9
1865 Male, age 51, unknown 40.3
2725 Female, age 75, unknown 39.6
1821 Female, age 72, unknown 35.4
2823 Male, age 76, right hemisphere 35.3
2503 Female, age 72, unknown 30.0
2785 Male, age 18, unknown 27.2
Substantia nigra
nTPM: 39.2
2699 Male, age 18, unknown 61.9
2665 Male, age 74, both hemispheres 51.5
2583 Male, age 75, right hemisphere 41.6
2590 Female, age 75, unknown 39.3
1916 Female, age 42, unknown 36.7
1851 Male, age 51, unknown 35.9
2409 Female, age 72, unknown 33.2
2241 Male, age 72, unknown 32.9
1889 Female, age 72, unknown 31.2
1941 Male, age 53, unknown 28.2
Superior colliculus
nTPM: 50.0
2664 Male, age 75, both hemispheres 84.1
1796 Male, age 53, unknown 80.6
1839 Male, age 51, unknown 61.3
1995 Male, age 72, unknown 46.1
2587 Male, age 74, left hemisphere 44.9
1895 Male, age 76, right hemisphere 42.6
1913 Female, age 42, unknown 39.5
2261 Male, age 18, unknown 39.1
2668 Female, age 75, unknown 31.8
2087 Female, age 72, unknown 30.3
Ventral tegmental area
nTPM: 54.1
2223 Female, age 72, unknown 96.1
2021 Male, age 53, unknown 67.2
1915 Female, age 42, unknown 48.7
1942 Male, age 51, unknown 47.9
2218 Male, age 76, both hemispheres 38.9
2410 Female, age 72, unknown 25.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.1
Samples: 183

Max nTPM: 121.5
Min nTPM: 4.8
Std nTPM: 13.5
Median nTPM: 13.6
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 121.5
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 83.0
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 82.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 67.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 62.0
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 51.4
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 44.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 37.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 37.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 36.5
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 36.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 27.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.8
FF:10158-103A5 76 years, female 27.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 18.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.5
Samples: 4

Max nTPM: 17.7
Min nTPM: 13.7
Sample A Female 15.3
Sample B Female 13.7
Sample C Male 15.4
Sample D Male 17.7
Midbrain
nTPM: 18.4
Samples: 4

Max nTPM: 24.4
Min nTPM: 13.6
Sample A Female 18.9
Sample B Female 13.6
Sample C Male 16.6
Sample D Male 24.4
Periaqueductal gray
nTPM: 15.0
Samples: 3

Max nTPM: 16.1
Min nTPM: 13.2
Sample B Female 13.2
Sample C Male 16.1
Sample D Male 15.6
Superior colliculi
nTPM: 18.1
Samples: 4

Max nTPM: 21.4
Min nTPM: 14.8
Sample A Female 20.7
Sample B Female 15.6
Sample C Male 14.8
Sample D Male 21.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 15.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.3
Samples: 4

Max nTPM: 17.3
Min nTPM: 12.6
Sample A Male 15.6
Sample B Male 12.6
Sample C Female 17.3
Sample D Female 15.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
69528070 Antisense, RP_050421_03_A08, Mouse strain C57BL/6J (56 days, male) 2.0
73520966 Antisense, RP_051017_04_E06, Mouse strain C57BL/6J (56 days, male) 0.3

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