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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:129.0 nTPM
HPA Brain:117.2 nTPM
GTEx:129.0 nTPM
FANTOM5:49.9 Scaled Tags Per Million
Pig:92.9 nTPM
Mouse:132.7 nTPM
Allen mouse:12.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

117.2
Sample id Sample description nTPM
Amygdala
nTPM: 117.2
2814 Male, age 76, right hemisphere 143.5
2514 Male, age 75, right hemisphere 121.9
2695 Female, age 67, right hemisphere 116.5
1987 Female, age 91, left hemisphere 103.8
2517 Female, age 94, left hemisphere 100.2
Basal amygdala
nTPM: 96.5
2243 Female, age 91, right hemisphere 116.4
2609 Male, age 75, right hemisphere 115.3
2110 Male, age 80, left hemisphere 102.9
1955 Male, age 76, both hemispheres 98.8
2685 Female, age 94, left hemisphere 85.1
2827 Female, age 67, right hemisphere 60.5
Central amygdala
nTPM: 112.5
1905 Male, age 76, both hemispheres 143.9
2515 Male, age 75, right hemisphere 108.6
2826 Female, age 94, left hemisphere 108.5
2239 Male, age 80, left hemisphere 106.5
2701 Female, age 91, right hemisphere 95.2
Corticomedial amygdala
nTPM: 99.3
2428 Male, age 75, right hemisphere 120.7
2829 Male, age 80, left hemisphere 116.5
2242 Female, age 91, right hemisphere 105.8
2429 Female, age 94, left hemisphere 99.4
2240 Male, age 76, both hemispheres 83.0
2535 Female, age 67, right hemisphere 70.4
Lateral amygdala
nTPM: 100.9
1883 Male, age 76, both hemispheres 135.0
2534 Female, age 94, left hemisphere 113.9
2516 Male, age 75, right hemisphere 113.0
2255 Female, age 91, right hemisphere 96.1
2256 Male, age 80, left hemisphere 81.0
2830 Female, age 67, right hemisphere 66.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

129.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 129.0
Samples: 181

Max nTPM: 438.5
Min nTPM: 62.7
Std nTPM: 48.6
Median nTPM: 122.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 438.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 335.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 286.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 271.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 265.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 257.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 253.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 249.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 245.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 212.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 209.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 205.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 190.6
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 183.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 179.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 177.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 177.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 175.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 175.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 174.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 172.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 170.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 168.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 168.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 164.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 159.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 159.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 157.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 157.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 156.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 156.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 154.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 153.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 151.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 151.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 150.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 149.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 149.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 147.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 145.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 144.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 143.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 143.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 142.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 142.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 141.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 140.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 140.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 140.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 139.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 139.0
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 137.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 137.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 137.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 137.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 137.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 136.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 135.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 134.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 133.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 133.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 132.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 132.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 131.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 131.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 130.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 130.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 130.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 130.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 129.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 129.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 129.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 128.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 127.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 127.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 126.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 126.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 125.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 124.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 124.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 124.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 124.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 124.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 123.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 123.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 123.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 123.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 123.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 122.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 122.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 122.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 121.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 120.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 119.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 119.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 119.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 118.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 118.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 118.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 118.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 117.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 117.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 117.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 116.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 115.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 115.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 115.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 115.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 114.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 113.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 113.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 112.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 112.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 112.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 112.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 111.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 110.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 110.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 110.4
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 109.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 108.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 107.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 105.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 104.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 103.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 103.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 103.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 103.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 102.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 101.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 100.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 99.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 99.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 99.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 99.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 98.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 98.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 98.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 98.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 98.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 97.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 97.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 95.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 95.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 94.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 94.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 92.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 92.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 92.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 91.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 91.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 91.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 91.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 89.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 89.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 88.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 88.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 87.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 84.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 84.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 82.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 81.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 81.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 81.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 80.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 80.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 79.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 79.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 79.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 79.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 78.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 78.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 77.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 77.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 76.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 76.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 72.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 70.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 67.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 65.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 62.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

49.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 49.9
FF:10151-102I7 76 years, female 49.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

92.9
Pig sample Sample description nTPM
Amygdala
nTPM: 92.9
Samples: 4

Max nTPM: 116.7
Min nTPM: 76.7
Sample A Female 116.7
Sample B Female 84.6
Sample C Male 93.5
Sample D Male 76.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

132.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 132.7
Samples: 4

Max nTPM: 139.6
Min nTPM: 127.7
Sample A Male 131.3
Sample B Male 139.6
Sample C Female 132.2
Sample D Female 127.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

12.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 12.2
75077193 Antisense, RP_060412_02_E05, Mouse strain C57BL/6J (56 days, male) 15.1
68745353 Antisense, RP_050210_01_G07, Mouse strain C57BL/6J (56 days, male) 9.2

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