A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.1
nTPM
Monaco:
2.8
nTPM
Schmiedel:
29.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.1
HPA sample
nTPM
Memory B-cell nTPM: 0.1
Samples: 6
Max nTPM: 0.5
Min nTPM: 0.0
P10809_1017
0.0
P10809_1025
0.0
P10809_1044
0.0
P10809_1063
0.1
P10809_1092
0.1
P10809_1105
0.5
Naive B-cell nTPM: 0.2
Samples: 6
Max nTPM: 0.3
Min nTPM: 0.0
P10809_1011
0.1
P10809_1029
0.2
P10809_1048
0.0
P10809_1067
0.2
P10809_1091
0.1
P10809_1104
0.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 0.8
Samples: 4
Max nTPM: 1.6
Min nTPM: 0.1
RHH5310_R3677
0.1
RHH5218_R3590
0.3
RHH5247_R3619
1.2
RHH5276_R3648
1.6
Naive B-cell nTPM: 2.8
Samples: 4
Max nTPM: 5.4
Min nTPM: 0.5
RHH5308_R3675
0.5
RHH5216_R3588
0.9
RHH5245_R3617
5.4
RHH5274_R3646
4.5
Non-switched memory B-cell nTPM: 1.8
Samples: 4
Max nTPM: 3.2
Min nTPM: 0.1
RHH5309_R3676
0.1
RHH5217_R3589
2.4
RHH5246_R3618
1.6
RHH5275_R3647
3.2
Plasmablast nTPM: 0.1
Samples: 4
Max nTPM: 0.2
Min nTPM: 0.0
RHH5312_R3679
0.1
RHH5220_R3592
0.0
RHH5249_R3621
0.0
RHH5278_R3650
0.2
Switched memory B-cell nTPM: 1.2
Samples: 4
Max nTPM: 3.6
Min nTPM: 0.1
RHH5311_R3678
0.1
RHH5219_R3591
0.8
RHH5248_R3620
0.1
RHH5277_R3649
3.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.4
Schmiedel sample id
TPM
Naive B-cell TPM: 29.4
Samples: 91
Max TPM: 81.3
Min TPM: 5.3
B_CELL_NAIVE_1
81.3
B_CELL_NAIVE_2
63.1
B_CELL_NAIVE_3
60.3
B_CELL_NAIVE_4
59.8
B_CELL_NAIVE_5
59.4
B_CELL_NAIVE_6
55.3
B_CELL_NAIVE_7
51.9
B_CELL_NAIVE_8
51.7
B_CELL_NAIVE_9
49.6
B_CELL_NAIVE_10
49.0
B_CELL_NAIVE_11
46.3
B_CELL_NAIVE_12
44.5
B_CELL_NAIVE_13
43.8
B_CELL_NAIVE_14
43.1
B_CELL_NAIVE_15
41.4
B_CELL_NAIVE_16
40.9
B_CELL_NAIVE_17
40.8
B_CELL_NAIVE_18
38.5
B_CELL_NAIVE_19
37.7
B_CELL_NAIVE_20
37.4
B_CELL_NAIVE_21
37.3
B_CELL_NAIVE_22
36.5
B_CELL_NAIVE_23
36.4
B_CELL_NAIVE_24
36.1
B_CELL_NAIVE_25
34.9
B_CELL_NAIVE_26
34.1
B_CELL_NAIVE_27
33.4
B_CELL_NAIVE_28
33.4
B_CELL_NAIVE_29
32.5
B_CELL_NAIVE_30
31.9
B_CELL_NAIVE_31
31.6
B_CELL_NAIVE_32
31.3
B_CELL_NAIVE_33
31.1
B_CELL_NAIVE_34
30.9
B_CELL_NAIVE_35
30.4
B_CELL_NAIVE_36
29.8
B_CELL_NAIVE_37
29.7
B_CELL_NAIVE_38
29.4
B_CELL_NAIVE_39
29.3
B_CELL_NAIVE_40
29.2
B_CELL_NAIVE_41
29.1
B_CELL_NAIVE_42
28.9
B_CELL_NAIVE_43
27.8
B_CELL_NAIVE_44
27.7
B_CELL_NAIVE_45
27.6
B_CELL_NAIVE_46
27.6
B_CELL_NAIVE_47
27.4
B_CELL_NAIVE_48
27.3
B_CELL_NAIVE_49
27.2
B_CELL_NAIVE_50
26.6
B_CELL_NAIVE_51
26.5
B_CELL_NAIVE_52
26.4
B_CELL_NAIVE_53
26.1
B_CELL_NAIVE_54
25.4
B_CELL_NAIVE_55
25.1
B_CELL_NAIVE_56
25.1
B_CELL_NAIVE_57
24.5
B_CELL_NAIVE_58
24.0
B_CELL_NAIVE_59
23.9
B_CELL_NAIVE_60
23.2
B_CELL_NAIVE_61
22.9
B_CELL_NAIVE_62
22.6
B_CELL_NAIVE_63
22.6
B_CELL_NAIVE_64
22.2
B_CELL_NAIVE_65
22.1
B_CELL_NAIVE_66
22.0
B_CELL_NAIVE_67
21.7
B_CELL_NAIVE_68
20.9
B_CELL_NAIVE_69
20.7
B_CELL_NAIVE_70
20.5
B_CELL_NAIVE_71
20.4
B_CELL_NAIVE_72
18.9
B_CELL_NAIVE_73
18.3
B_CELL_NAIVE_74
16.8
B_CELL_NAIVE_75
16.3
B_CELL_NAIVE_76
16.3
B_CELL_NAIVE_77
16.1
B_CELL_NAIVE_78
15.6
B_CELL_NAIVE_79
15.6
B_CELL_NAIVE_80
15.4
B_CELL_NAIVE_81
14.0
B_CELL_NAIVE_82
13.8
B_CELL_NAIVE_83
13.5
B_CELL_NAIVE_84
12.3
B_CELL_NAIVE_85
11.4
B_CELL_NAIVE_86
10.3
B_CELL_NAIVE_87
10.3
B_CELL_NAIVE_88
10.2
B_CELL_NAIVE_89
9.4
B_CELL_NAIVE_90
7.5
B_CELL_NAIVE_91
5.3
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